Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:retinal ganglion cell axon guidance
go back to main search page
Accession:GO:0031290 term browser browse the term
Definition:The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.
Synonyms:exact_synonym: retinal ganglion cell axon pathfinding



show annotations for term's descendants           Sort by:
retinal ganglion cell axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alcam activated leukocyte cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:48,336,123...48,536,296
Ensembl chr11:48,336,169...48,537,954
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158497 (MGI:2654391|PMID:12654290) RGD PMID:12654290 MGI:2654391 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Efna5 ephrin A5 acts_upstream_of_or_within ISO (MGI:3583377|PMID:15996548) RGD PMID:15996548 MGI:3583377 NCBI chr 9:102,316,753...102,595,480
Ensembl chr 9:102,320,295...102,597,413
JBrowse link
G Epha7 Eph receptor A7 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3583808 (MGI:3583377|PMID:15996548)
GO_REF:0000107
RGD
Ensembl
PMID:15996548 GO_REF:0000107 MGI:3583377 NCBI chr 5:42,975,353...43,128,703
Ensembl chr 5:42,975,405...43,127,112
JBrowse link
G Ephb1 Eph receptor B1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:2675767|PMID:12971893)
UniProt
RGD
PMID:12971893 GO_REF:0000024 MGI:2675767 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:2675767 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Ephb3 Eph receptor B3 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:2675767 NCBI chr11:79,840,668...79,859,345
Ensembl chr11:79,840,668...79,859,370
JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3790243 (MGI:3790171|PMID:18434421)
GO_REF:0000107
RGD
Ensembl
PMID:18434421 GO_REF:0000107 MGI:3790171 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Isl2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3046260 (MGI:3513624|PMID:15537545)
Ensembl
RGD
PMID:15537545 GO_REF:0000107 MGI:3513624 NCBI chr 8:55,923,805...55,928,790
Ensembl chr 8:55,923,805...55,928,790
JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (MGI:6109213|PMID:29079753) RGD PMID:29079753 MGI:6109213 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
G Nrcam neuronal cell adhesion molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2387976 (MGI:3716012|PMID:16701205)
Ensembl
RGD
PMID:16701205 GO_REF:0000107 MGI:3716012 NCBI chr 6:61,402,813...61,698,536
Ensembl chr 6:61,329,863...61,702,992
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:5141569|PMID:21658587) RGD PMID:21658587 MGI:5141569 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO MGI:102523|MGI:2429634 (MGI:2156641|PMID:11807038), (MGI:3790171|PMID:18434421) RGD PMID:11807038 PMID:18434421 MGI:2156641 MGI:3790171 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO MGI:102524 (MGI:2156641|PMID:11807038) RGD PMID:11807038 MGI:2156641 NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797
JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISO
ISS
(PMID:15080886)
GO_REF:0000024
RGD
UniProt
PMID:15080886 GO_REF:0000024 NCBI chr 9:106,639,573...107,343,698
Ensembl chr 9:106,639,573...107,343,698
JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (MGI:4368044|PMID:19782674) RGD PMID:19782674 MGI:4368044 NCBI chr11:12,528,949...14,096,726
Ensembl chr11:12,528,951...13,041,536
JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1856685 (MGI:1097191|PMID:9331275)
GO_REF:0000107
RGD
Ensembl
PMID:9331275 GO_REF:0000107 MGI:1097191 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370
JBrowse link
G Sema4f ssemaphorin 4F acts_upstream_of_or_within IDA PMID:10051670 MGI PMID:10051670 RGD:69991 NCBI chr 4:115,411,411...115,437,721
Ensembl chr 4:115,411,417...115,437,721
JBrowse link
G Slit1 slit guidance ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1315205|MGI:2179459 (MGI:2157173|PMID:11804570), (MGI:3653077|PMID:16885222), (MGI:3701747|PMID:16828733)
Ensembl
RGD
PMID:11804570 PMID:16828733 PMID:16885222 GO_REF:0000107 MGI:2157173 MGI:3653077 MGI:3701747 NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127
JBrowse link
G Slit2 slit guidance ligand 2 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:10864954), (PMID:19498462)
GO_REF:0000118
GO_REF:0000107
MGI:1315203|MGI:2179460 (MGI:2157173|PMID:11804570), (MGI:3653077|PMID:16885222), (MGI:3701747|PMID:16828733)
RGD
TreeGrafter
Ensembl
PMID:10864954 PMID:11804570 PMID:16828733 PMID:16885222 PMID:19498462 GO_REF:0000107 GO_REF:0000118 MGI:2157173 MGI:3653077 MGI:3701747 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in
NOT|involved_in
ISO (MGI:5141569|PMID:21658587) RGD PMID:21658587 MGI:5141569 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Zic2 Zic family member 2 involved_in ISO (MGI:2675195|PMID:13678579) RGD PMID:13678579 MGI:2675195 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522
JBrowse link
negative regulation of retinal ganglion cell axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit2 slit guidance ligand 2 involved_in ISO
IEA
(PMID:17062560)
GO_REF:0000107
RGD
Ensembl
PMID:17062560 GO_REF:0000107 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
JBrowse link
positive regulation of retinal ganglion cell axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 involved_in ISO (MGI:6727566|PMID:33712461) RGD PMID:33712461 MGI:6727566 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
regulation of retinal ganglion cell axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:1928568|PMID:11163266)
UniProt
RGD
PMID:11163266 GO_REF:0000024 MGI:1928568 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    developmental process 7026
      anatomical structure morphogenesis 2998
        cell morphogenesis 1137
          cell morphogenesis involved in neuron differentiation 709
            axonogenesis 532
              axon guidance 273
                retinal ganglion cell axon guidance 23
                  negative regulation of retinal ganglion cell axon guidance 1
                  positive regulation of retinal ganglion cell axon guidance 1
                  regulation of retinal ganglion cell axon guidance + 3
Path 2
Term Annotations click to browse term
  biological_process 20292
    developmental process 7026
      anatomical structure development 6534
        multicellular organism development 5258
          system development 4539
            nervous system development 2796
              neurogenesis 2091
                generation of neurons 1804
                  neuron differentiation 1722
                    neuron development 1420
                      neuron projection development 1245
                        neuron projection morphogenesis 766
                          neuron projection guidance 273
                            axon guidance 273
                              retinal ganglion cell axon guidance 23
                                negative regulation of retinal ganglion cell axon guidance 1
                                positive regulation of retinal ganglion cell axon guidance 1
                                regulation of retinal ganglion cell axon guidance + 3
paths to the root