ONTOLOGY REPORT - ANNOTATIONS

Term:peptide cross-linking
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Accession:GO:0018149 term browser browse the term
Definition:The formation of a covalent cross-link between or within protein chains.

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peptide cross-linking term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Anxa1 annexin A1 GBrowse link ISO 1 223,478,436 223,494,455 RGD:1624291 RGD
G Anxa1 annexin A1 GBrowse link IEA 1 223,478,436 223,494,455 RGD:1600115 ENSEMBL
G Col3a1 collagen, type III, alpha 1 GBrowse link IEA 9 44,281,582 44,317,831 RGD:1600115 ENSEMBL
G Csta cystatin A (stefin A) GBrowse link ISO 11 66,456,248 66,467,253 RGD:1624291 RGD
G Dsp desmoplakin GBrowse link ISO 17 32,848,313 32,896,044 RGD:1624291 RGD
G Dsp desmoplakin GBrowse link IEA 17 32,848,313 32,896,044 RGD:1600115 ENSEMBL
G Epb42 erythrocyte membrane protein band 4.2 GBrowse link IEA 3 107,806,273 107,824,496 RGD:1600115 InterPro
G Evpl envoplakin GBrowse link ISO 10 106,336,953 106,353,217 RGD:1624291 RGD
G F13a1 coagulation factor XIII, A1 polypeptide GBrowse link ISO 17 34,093,525 34,270,498 RGD:1624291 RGD
G F13a1 coagulation factor XIII, A1 polypeptide GBrowse link IEA 17 34,093,525 34,270,498 RGD:1600115 ENSEMBL
G F13a1 coagulation factor XIII, A1 polypeptide GBrowse link IEA 17 34,093,525 34,270,498 RGD:1600115 InterPro
G Fn1 fibronectin 1 GBrowse link ISO 9 70,702,181 70,771,155 RGD:1624291 RGD
G Ivl involucrin GBrowse link ISO 2 185,556,271 185,558,310 RGD:1624291 RGD
G Ivl involucrin GBrowse link IEA 2 185,556,271 185,558,310 RGD:1600115 ENSEMBL
G Lor loricrin GBrowse link ISO 2 184,953,538 184,955,283 RGD:1624291 RGD
G Sprr1a small proline-rich protein 1A GBrowse link ISO 2 185,463,951 185,465,849 RGD:1624291 RGD
G Sprr1a small proline-rich protein 1A GBrowse link IEA 2 185,463,951 185,465,849 RGD:1600115 InterPro
G Sprr1b small proline-rich protein 1B GBrowse link ISO 2 185,418,131 185,418,568 RGD:1624291 RGD
G Sprr3 small proline-rich protein 3 GBrowse link IEA 2 185,436,598 185,437,356 RGD:1600115 InterPro
G Tgm1 transglutaminase 1 GBrowse link NAS 15 33,846,367 33,859,615 RGD:61767 RGD
G Tgm3 transglutaminase 3, E polypeptide GBrowse link ISO 3 117,622,727 117,659,103 RGD:1624291 RGD
G Tgm3 transglutaminase 3, E polypeptide GBrowse link IEA 3 117,622,727 117,659,103 RGD:1600115 ENSEMBL
G Tgm4 transglutaminase 4 (prostate) GBrowse link IEA 8 127,782,460 127,819,491 RGD:1600115 InterPro
G Tgm5 transglutaminase 5 GBrowse link IEA 3 107,834,647 107,864,542 RGD:1600115 InterPro
G Tgm6 transglutaminase 6 GBrowse link IEA 3 117,722,990 117,753,457 RGD:1600115 InterPro
G Tgm7 transglutaminase 7 GBrowse link IEA 3 107,880,960 107,905,261 RGD:1600115 InterPro
G Thbs1 thrombospondin 1 ISO RGD:1624291 RGD
isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Tgm2 transglutaminase 2, C polypeptide GBrowse link IDA 3 148,832,866 148,862,385 RGD:1579955 RGD
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Bgn biglycan GBrowse link ISO X 159,380,557 159,393,409 RGD:1624291 RGD
G Bgn biglycan GBrowse link IEA X 159,380,557 159,393,409 RGD:1600115 ENSEMBL
G Dcn decorin GBrowse link ISO 7 35,004,234 35,045,191 RGD:1624291 RGD
G Dcn decorin GBrowse link IEA 7 35,004,234 35,045,191 RGD:1600115 ENSEMBL
G Egflam EGF-like, fibronectin type III and laminin G domains GBrowse link ISO 2 56,493,064 56,666,659 RGD:1624291 RGD
G Egflam EGF-like, fibronectin type III and laminin G domains GBrowse link IEA 2 56,493,064 56,666,659 RGD:1600115 ENSEMBL
G Prss34 protease, serine, 34 GBrowse link ISO 10 14,546,640 14,548,397 RGD:1624291 RGD
G Prss34 protease, serine, 34 GBrowse link IEA 10 14,546,640 14,548,397 RGD:1600115 ENSEMBL
G Spock2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 GBrowse link ISO 20 27,397,527 27,425,914 RGD:1624291 RGD
G Spock3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 GBrowse link ISO 16 29,337,211 29,751,950 RGD:1624291 RGD
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 136531
    metabolic process 36512
      cellular metabolic process 30527
        cellular macromolecule metabolic process 21896
          cellular protein metabolic process 8800
            cellular protein modification process 6858
              peptide cross-linking 38
                isopeptide cross-linking + 1
                peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                peptide cross-linking via 5-imidazolinone glycine + 0
                peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                peptide cross-linking via L-cystine 0
                peptide cross-linking via L-histidyl-L-tyrosine + 0
                peptide cross-linking via L-lysinoalanine 0
                peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                peptide cross-linking via S-glycyl-L-cysteine 0
                peptide cross-linking via an oxazole or thiazole + 0
                peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 10
                peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
Path 2
Term Annotations click to browse term
  biological_process 136531
    metabolic process 36512
      organic substance metabolic process 32846
        macromolecule metabolic process 25254
          protein metabolic process 10760
            protein modification process 6858
              cellular protein modification process 6858
                peptide cross-linking 38
                  isopeptide cross-linking + 1
                  peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                  peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                  peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                  peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                  peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                  peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                  peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                  peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                  peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                  peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                  peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                  peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                  peptide cross-linking via 5-imidazolinone glycine + 0
                  peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                  peptide cross-linking via L-cystine 0
                  peptide cross-linking via L-histidyl-L-tyrosine + 0
                  peptide cross-linking via L-lysinoalanine 0
                  peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                  peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                  peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                  peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                  peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                  peptide cross-linking via S-glycyl-L-cysteine 0
                  peptide cross-linking via an oxazole or thiazole + 0
                  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 10
                  peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
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