nuclear matrix - Ontology Report - Rat Genome Database

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Keyword

ONTOLOGY REPORT - ANNOTATIONS

Term:	nuclear matrix	go back to main search page
Accession:	GO:0016363	browse the term
Definition:	The dense fibrillar network lying on the inner side of the nuclear membrane.
Synonyms:	exact_synonym:	nucleoskeleton
	xref_analog:	Wikipedia:Nuclear_matrix

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nuclear matrix
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	AHCTF1	AT hook containing transcription factor 1		IEA	1	247,002,400	247,094,726	RGD:2290271	UniProtKB
G	AHCTF1	AT hook containing transcription factor 1		IEA	1	247,002,400	247,094,726	RGD:2290271	ENSEMBL
G	AKAP8	A kinase (PRKA) anchor protein 8		ISS	19	15,464,332	15,490,612	RGD:2290271	UniProtKB
G	AKAP8L	A kinase (PRKA) anchor protein 8-like		IDA	19	15,490,859	15,529,833	RGD:2290271	UniProtKB
G	ALOX5	arachidonate 5-lipoxygenase		IDA	10	45,869,624	45,941,567	RGD:2290271	UniProtKB
G	ARFGEF1	ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)		IEA	8	68,109,884	68,255,912	RGD:2290271	UniProtKB
G	ATN1	atrophin 1		IDA	12	7,033,626	7,051,484	RGD:2290271	UniProtKB
G	ATXN1	ataxin 1		IDA	6	16,299,343	16,761,721	RGD:2290271	UniProtKB
G	ATXN1	ataxin 1		IDA	6	16,299,343	16,761,721	RGD:2290271	MGI
G	ATXN3	ataxin 3		IEA	14	92,524,896	92,572,965	RGD:2290271	UniProtKB
G	ATXN7	ataxin 7		IEA	3	63,850,233	63,989,138	RGD:2290271	UniProtKB
G	BLM	Bloom syndrome, RecQ helicase-like		IDA	15	91,260,579	91,358,686	RGD:2290271	UniProtKB
G	CAD	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase		IDA	2	27,440,258	27,466,654	RGD:2290271	BHF-UCL
G	CASK	calcium/calmodulin-dependent serine protein kinase (MAGUK family)		IDA	X	41,374,187	41,782,287	RGD:2290271	BHF-UCL
G	CEBPA	CCAAT/enhancer binding protein (C/EBP), alpha		IEA	19	33,790,840	33,793,430	RGD:2290271	ENSEMBL
G	CEBPB	CCAAT/enhancer binding protein (C/EBP), beta		IEA	20	48,807,120	48,809,227	RGD:2290271	ENSEMBL
G	CENPF	centromere protein F, 350/400kDa		IDA	1	214,776,532	214,837,914	RGD:2290271	UniProtKB
G	CENPW	centromere protein W		IEA	6	126,661,253	126,669,754	RGD:2290271	UniProtKB
G	CFL1	cofilin 1 (non-muscle)		IEA	11	65,622,282	65,625,804	RGD:2290271	UniProtKB
G	CFL2	cofilin 2 (muscle)		IEA	14	35,179,588	35,184,029	RGD:2290271	UniProtKB
G	CHMP1A	charged multivesicular body protein 1A		IDA	16	89,710,839	89,724,129	RGD:2290271	UniProtKB
G	CLIC4	chloride intracellular channel 4		IDA	1	25,071,760	25,170,815	RGD:2290271	UniProtKB
G	CXXC1	CXXC finger protein 1		IEA	18	47,808,713	47,814,692	RGD:2290271	ENSEMBL
G	DNMT3A	DNA (cytosine-5-)-methyltransferase 3 alpha		IDA	2	25,455,830	25,565,459	RGD:2290271	UniProtKB
G	ENC1	ectodermal-neural cortex 1 (with BTB domain)		IEA	5	73,923,231	73,937,249	RGD:2290271	UniProtKB
G	ERCC8	excision repair cross-complementing rodent repair deficiency, complementation group 8		IDA	5	60,169,659	60,240,905	RGD:2290271	MGI
G	FIGN	fidgetin		ISS	2	164,464,118	164,592,513	RGD:2290271	UniProtKB
G	GFI1	growth factor independent 1 transcription repressor		IDA	1	92,940,318	92,952,433	RGD:2290271	UniProtKB
G	GFI1B	growth factor independent 1B transcription repressor		IDA	9	135,854,098	135,867,084	RGD:2290271	UniProtKB
G	GHRHR	growth hormone releasing hormone receptor		IDA	7	31,003,636	31,019,146	RGD:2290271	BHF-UCL
G	GMCL1	germ cell-less, spermatogenesis associated 1		IEA	2	70,056,818	70,106,727	RGD:2290271	UniProtKB
G	GMCL1P1	germ cell-less, spermatogenesis associated 1 pseudogene 1		IEA	5	177,611,511	177,614,433	RGD:2290271	UniProtKB
G	HAT1	histone acetyltransferase 1		IEA	2	172,778,935	172,848,600	RGD:2290271	UniProtKB
G	HLCS	holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)		IDA	21	38,123,189	38,362,545	RGD:2290271	UniProtKB
G	HNRNPM	heterogeneous nuclear ribonucleoprotein M		IDA	19	8,509,803	8,554,002	RGD:2290271	BHF-UCL
G	JAK2	Janus kinase 2		IEA	9	4,985,245	5,128,183	RGD:2290271	ENSEMBL
G	KIF4A	kinesin family member 4A		IEA	X	69,509,879	69,640,774	RGD:2290271	UniProtKB
G	KIF4B	kinesin family member 4B		IEA	5	154,393,260	154,397,685	RGD:2290271	UniProtKB
G	KIN	KIN, antigenic determinant of recA protein homolog (mouse)		IDA	10	7,792,925	7,829,990	RGD:2290271	UniProtKB
G	KRT8	keratin 8		IEA	12	53,290,971	53,343,650	RGD:2290271	UniProtKB
G	LRIF1	ligand dependent nuclear receptor interacting factor 1		IEA	1	111,489,812	111,506,566	RGD:2290271	UniProtKB
G	MAEA	macrophage erythroblast attacher		IDA	4	1,283,672	1,333,925	RGD:2290271	UniProtKB
G	MATR3	matrin 3		IEA	5	138,609,441	138,667,366	RGD:2290271	UniProtKB
G	MBD1	methyl-CpG binding domain protein 1		ISS	18	47,793,252	47,808,144	RGD:2290271	UniProtKB
G	MEN1	multiple endocrine neoplasia I		IDA	11	64,570,986	64,578,766	RGD:2290271	UniProtKB
G	MYB	v-myb myeloblastosis viral oncogene homolog (avian)		NAS	6	135,502,453	135,540,311	RGD:2290271	UniProtKB
G	NONO	non-POU domain containing, octamer-binding		IDA	X	70,503,042	70,521,018	RGD:2290271	BHF-UCL
G	NSMF	NMDA receptor synaptonuclear signaling and neuronal migration factor		ISS	9	140,342,022	140,353,786	RGD:2290271	UniProtKB
G	NUFIP1	nuclear fragile X mental retardation protein interacting protein 1		IDA	13	45,513,384	45,563,613	RGD:2290271	HGNC
G	NUMA1	nuclear mitotic apparatus protein 1		IEA	11	71,713,911	71,791,573	RGD:2290271	UniProtKB
G	OGG1	8-oxoguanine DNA glycosylase		IDA	3	9,791,628	9,808,353	RGD:2290271	UniProtKB
G	PAXIP1	PAX interacting (with transcription-activation domain) protein 1		IEA	7	154,735,400	154,794,682	RGD:2290271	UniProtKB
G	PHACTR3	phosphatase and actin regulator 3		IEA	20	58,152,564	58,422,766	RGD:2290271	UniProtKB
G	PHF5A	PHD finger protein 5A		IEA	22	41,855,721	41,864,708	RGD:2290271	ENSEMBL
G	PIAS4	protein inhibitor of activated STAT, 4		IEA	19	4,007,749	4,038,067	RGD:2290271	ENSEMBL
G	PML	promyelocytic leukemia		IEA	15	74,287,014	74,340,160	RGD:2290271	ENSEMBL
G	PML	promyelocytic leukemia		IDA	15	74,287,014	74,340,160	RGD:2290271	UniProtKB
G	POLA1	polymerase (DNA directed), alpha 1, catalytic subunit		IDA	X	24,712,064	25,015,103	RGD:2290271	UniProtKB
G	PPIG	peptidylprolyl isomerase G (cyclophilin G)		IEA	2	170,440,850	170,494,254	RGD:2290271	UniProtKB
G	PRKCD	protein kinase C, delta		IEA	3	53,195,223	53,226,733	RGD:2290271	ENSEMBL
G	PRKCZ	protein kinase C, zeta		IEA	1	1,981,909	2,116,834	RGD:2290271	ENSEMBL
G	PRPF40A	PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)		IDA	2	153,508,107	153,573,975	RGD:2290271	UniProtKB
G	PSMA6	proteasome (prosome, macropain) subunit, alpha type, 6		ISS	14	35,761,574	35,786,680	RGD:2290271	BHF-UCL
G	PSMA6	proteasome (prosome, macropain) subunit, alpha type, 6		IEA	14	35,761,574	35,786,680	RGD:2290271	ENSEMBL
G	PSPC1	paraspeckle component 1		IEA	13	20,248,892	20,357,159	RGD:2290271	UniProtKB
G	RUNX1T1	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)		IDA	8	92,967,195	93,115,454	RGD:2290271	UniProtKB
G	RUVBL1	RuvB-like 1 (E. coli)		IEA	3	127,799,800	127,842,671	RGD:2290271	UniProtKB
G	RUVBL2	RuvB-like 2 (E. coli)		IEA	19	49,497,156	49,519,182	RGD:2290271	UniProtKB
G	SATB1	SATB homeobox 1		IEA	3	18,389,133	18,480,265	RGD:2290271	ENSEMBL
G	SATB1	SATB homeobox 1		IEA	3	18,389,133	18,480,265	RGD:2290271	UniProtKB
G	SATB2	SATB homeobox 2		IEA	2	200,134,223	200,335,989	RGD:2290271	UniProtKB
G	SCAF8	SR-related CTD-associated factor 8		ISS	6	155,054,512	155,155,194	RGD:2290271	UniProtKB
G	SFPQ	splicing factor proline/glutamine-rich		IDA	1	35,649,201	35,658,743	RGD:2290271	BHF-UCL
G	SMARCAD1	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1		NAS	4	95,128,759	95,212,443	RGD:2290271	UniProtKB
G	SMC3	structural maintenance of chromosomes 3		IDA	10	112,327,449	112,364,392	RGD:2290271	UniProtKB
G	SNW1	SNW domain containing 1		IDA	14	78,183,942	78,227,497	RGD:2290271	UniProtKB
G	SORBS1	sorbin and SH3 domain containing 1		IEA	10	97,071,530	97,321,171	RGD:2290271	UniProtKB
G	SPTBN4	spectrin, beta, non-erythrocytic 4		IDA	19	40,973,126	41,082,365	RGD:2290271	UniProtKB
G	SPTBN4	spectrin, beta, non-erythrocytic 4		ISS	19	40,973,126	41,082,365	RGD:2290271	UniProtKB
G	SRPK1	SRSF protein kinase 1		IEA	6	35,800,811	35,888,957	RGD:2290271	UniProtKB
G	SRRM1	serine/arginine repetitive matrix 1		IEA	1	24,969,594	24,999,772	RGD:2290271	UniProtKB
G	TENM1	teneurin transmembrane protein 1		ISS	X	123,509,753	124,097,666	RGD:2290271	UniProtKB
G	TEP1	telomerase-associated protein 1		IDA	14	20,833,826	20,881,579	RGD:2290271	MGI
G	TGFB1I1	transforming growth factor beta 1 induced transcript 1		IEA	16	31,483,476	31,489,281	RGD:2290271	UniProtKB
G	THOC1	THO complex 1		IEA	18	214,520	268,059	RGD:2290271	UniProtKB
G	TINF2	TERF1 (TRF1)-interacting nuclear factor 2		IEA	14	24,708,849	24,711,880	RGD:2290271	UniProtKB
G	TP53	tumor protein p53		IDA	17	7,571,720	7,590,868	RGD:2290271	UniProtKB
G	UHRF1	ubiquitin-like with PHD and ring finger domains 1		ISS	19	4,909,510	4,962,165	RGD:2290271	BHF-UCL
G	YEATS4	YEATS domain containing 4		NAS	12	69,753,532	69,784,576	RGD:2290271	UniProtKB
G	YY1	YY1 transcription factor		IEA	14	100,705,102	100,744,804	RGD:2290271	UniProtKB
G	ZNF326	zinc finger protein 326		IEA	1	90,460,678	90,494,094	RGD:2290271	UniProtKB
G	ZNF350	zinc finger protein 350		IEA	19	52,467,593	52,490,079	RGD:2290271	UniProtKB

Term paths to the root

Path 1
Term	Annotations
cellular_component	88560
organelle part	22263
intracellular organelle part	21810
nuclear part	11132
nuclear matrix	92
Path 2
Term	Annotations
cellular_component	88560
cell	71622
cell part	71618
intracellular	56979
intracellular part	56007
intracellular organelle	36498
intracellular membrane-bounded organelle	31362
nucleus	18271
nuclear part	11132
nuclear lumen	9763
nuclear periphery	121
nuclear matrix	92