ONTOLOGY REPORT - ANNOTATIONS

Term:rRNA transcription
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Accession:GO:0009303 term browser browse the term
Definition:The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template.
Synonyms:broad_synonym: rRNA biosynthesis;   rRNA biosynthetic process;   rRNA synthesis

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rRNA transcription term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ang angiogenin, ribonuclease, RNase A family, 5 GBrowse link ISO 15 27,083,089 27,083,526 RGD:1624291 RGD
G Cd3eap CD3e molecule, epsilon associated protein GBrowse link ISO 1 78,722,001 78,725,277 RGD:1624291 RGD
G Cd3eap CD3e molecule, epsilon associated protein GBrowse link IEA 1 78,722,001 78,725,277 RGD:1600115 ENSEMBL
G Cdkn2a cyclin-dependent kinase inhibitor 2A GBrowse link ISO 5 108,908,749 108,916,380 RGD:1624291 RGD
G LOC257642 rRNA promoter binding protein IDA RGD:1299600 RGD
G Npm3 nucleophosmin/nucleoplasmin, 3 GBrowse link ISO 1 250,961,968 250,963,813 RGD:1624291 RGD
G Npm3 nucleophosmin/nucleoplasmin, 3 GBrowse link IEA 1 250,961,968 250,963,813 RGD:1600115 ENSEMBL
G Polr1a polymerase (RNA) I polypeptide A GBrowse link IDA 4 105,187,426 105,251,385 RGD:2312782 RGD
G Polr1b polymerase (RNA) I polypeptide B GBrowse link IDA 3 116,706,483 116,730,946 RGD:2312782 RGD
G Polr1b polymerase (RNA) I polypeptide B GBrowse link ISO 3 116,706,483 116,730,946 RGD:1624291 RGD
G Polr1b polymerase (RNA) I polypeptide B GBrowse link IEA 3 116,706,483 116,730,946 RGD:1600115 ENSEMBL
G Polr1e polymerase (RNA) I polypeptide E GBrowse link ISO 5 61,581,916 61,598,266 RGD:1624291 RGD
G Polr1e polymerase (RNA) I polypeptide E GBrowse link IEA 5 61,581,916 61,598,266 RGD:1600115 ENSEMBL
G Rnasek ribonuclease, RNase K GBrowse link IEA 10 57,077,236 57,078,954 RGD:1600115 InterPro
G Rnasek ribonuclease, RNase K GBrowse link ISO 10 57,077,236 57,078,954 RGD:1624291 RGD
G Sirt7 sirtuin 7 GBrowse link IEA 10 110,009,669 110,016,346 RGD:1600115 ENSEMBL
G Sirt7 sirtuin 7 GBrowse link ISO 10 110,009,669 110,016,346 RGD:1624291 RGD
G Top1 topoisomerase (DNA) I GBrowse link IMP 3 151,428,931 151,512,884 RGD:2317069 RGD
G Tp53 tumor protein p53 GBrowse link ISO 10 56,399,721 56,411,150 RGD:1624291 RGD
RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B GBrowse link ISS 6 42,127,301 42,204,465 RGD:1600115 UniProtKB
G Taf1b TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B GBrowse link ISO 6 42,127,301 42,204,465 RGD:1624291 RGD
transcription of nuclear large rRNA transcript from RNA polymerase I promoter term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Tcof1 Treacher Collins-Franceschetti syndrome 1 GBrowse link ISO 18 56,766,742 56,800,908 RGD:1624291 RGD
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 135981
    metabolic process 36384
      biosynthetic process 14027
        cellular biosynthetic process 13406
          cellular macromolecule biosynthetic process 10787
            transcription, DNA-dependent 8758
              rRNA transcription 22
                5S class rRNA transcription from RNA polymerase III type 1 promoter + 0
                rRNA transcription from mitochondrial promoter 0
                rRNA transcription from plastid promoter 0
                transcription of nuclear large rRNA transcript from RNA polymerase I promoter + 3
Path 2
Term Annotations click to browse term
  biological_process 135981
    metabolic process 36384
      cellular metabolic process 30418
        cellular aromatic compound metabolic process 15054
          nucleobase-containing compound metabolic process 14434
            nucleic acid metabolic process 12471
              RNA metabolic process 10203
                RNA biosynthetic process 8824
                  transcription, DNA-dependent 8758
                    rRNA transcription 22
                      5S class rRNA transcription from RNA polymerase III type 1 promoter + 0
                      rRNA transcription from mitochondrial promoter 0
                      rRNA transcription from plastid promoter 0
                      transcription of nuclear large rRNA transcript from RNA polymerase I promoter + 3
paths to the root

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