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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA-templated transcription termination
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Accession:GO:0006353 term browser browse the term
Definition:The completion of transcription: the RNA polymerase pauses, the RNA-DNA hybrid dissociates, followed by the release of the RNA polymerase from its DNA template.
Synonyms:exact_synonym: termination of DNA-dependent transcription
 narrow_synonym: transcription termination from bacterial-type RNA polymerase promoter
 broad_synonym: transcriptional complex disassembly
 related_synonym: transcription termination factor activity;   transcription termination, DNA-dependent
 alt_id: GO:0001125


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DNA-templated transcription termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G ENSRNOG00000063939 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr15:43,363,981...43,364,769 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20550934)		 UniProt
RGD		 PMID:20550934 GO_REF:0000024 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Polr2a RNA polymerase II subunit A involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296 		JBrowse link
G Setx senataxin involved_in ISO (PMID:26700805) RGD PMID:26700805 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Smn1 survival of motor neuron 1, telomeric involved_in ISS
ISO		 GO_REF:0000024
(PMID:26700805)		 UniProt
RGD		 PMID:26700805 GO_REF:0000024 NCBI chr 2:31,490,018...31,501,065
Ensembl chr 2:31,490,015...31,501,060 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
negative regulation of termination of DNA-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Per2 period circadian regulator 2 involved_in ISO (MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:5430667 NCBI chr 9:92,007,289...92,049,551
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf4 SR-related CTD-associated factor 4 involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:31104839)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 UniProt
RGD
Ensembl
TreeGrafter
GO_Central		 PMID:31104839 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr11:29,460,479...29,521,153
Ensembl chr11:29,465,106...29,521,153 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISO
ISS
IEA		 (PMID:31104839)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
positive regulation of termination of DNA-templated transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin involved_in ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
positive regulation of termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:29196535)		 Ensembl
UniProt
RGD		 PMID:29196535 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:153,128,334...153,253,905
Ensembl chr 4:153,128,334...153,253,905 		JBrowse link
positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin involved_in ISO (PMID:21700224) RGD PMID:21700224 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
regulation of termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:20961378) RGD PMID:20961378 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
termination of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000118
(PMID:20550934)		 UniProt
GO_Central
TreeGrafter
RGD		 PMID:20550934 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:30,226,345...30,233,402
Ensembl chr 4:30,226,343...30,233,584 		JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:18,598,202...18,608,278
Ensembl chr 7:18,598,103...18,620,684 		JBrowse link
termination of RNA polymerase I transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 PMID:9582279
(PMID:9582279)
GO_REF:0000033
GO_REF:0000118
(MGI:7565909|PMID:10589839)
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:9582279 PMID:10589839 PMID:9582279 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 MGI:7565909, RGD:8554461 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120 		JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310 		JBrowse link
G Polr1h RNA polymerase I subunit H involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854 		JBrowse link
G Ttf1 transcription termination factor 1 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (MGI:7565909|PMID:10589839)
(PMID:7720715)
GO_REF:0000033		 RGD
GO_Central		 PMID:7720715 PMID:10589839 GO_REF:0000033 MGI:7565909 NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257 		JBrowse link
termination of RNA polymerase II transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drosha drosha ribonuclease III involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688 		JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408 		JBrowse link
G Med18 mediator complex subunit 18 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 5:144,663,316...144,668,652
Ensembl chr 5:144,663,252...144,668,635 		JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit involved_in ISO
IBA		 (PMID:29196535)
GO_REF:0000033		 RGD
GO_Central		 PMID:29196535 GO_REF:0000033 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Setx senataxin involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:22767893)		 GO_Central
RGD		 PMID:22767893 GO_REF:0000033 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803 		JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) RGD PMID:15565158 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
termination of RNA polymerase III transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:168,982,846...168,987,043
Ensembl chr 3:168,982,812...168,987,040 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        macromolecule metabolic process 9473
          macromolecule biosynthetic process 7370
            RNA biosynthetic process 3384
              DNA-templated transcription termination 25
                negative regulation of termination of DNA-templated transcription + 3
                positive regulation of termination of DNA-templated transcription + 2
                regulation of termination of DNA-templated transcription + 6
                termination of RNA polymerase I transcription + 5
                termination of RNA polymerase II transcription + 10
                termination of RNA polymerase III transcription 1
                termination of mitochondrial transcription 2
                transcription ternary complex disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      organic substance metabolic process 11221
        organic cyclic compound metabolic process 6213
          nucleobase-containing compound metabolic process 5696
            nucleic acid metabolic process 5103
              nucleic acid biosynthetic process 3515
                RNA biosynthetic process 3384
                  DNA-templated transcription 3361
                    DNA-templated transcription termination 25
                      negative regulation of termination of DNA-templated transcription + 3
                      positive regulation of termination of DNA-templated transcription + 2
                      regulation of termination of DNA-templated transcription + 6
                      termination of RNA polymerase I transcription + 5
                      termination of RNA polymerase II transcription + 10
                      termination of RNA polymerase III transcription 1
                      termination of mitochondrial transcription 2
                      transcription ternary complex disassembly 0
paths to the root