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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-templated transcription initiation
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Accession:GO:0006352 term browser browse the term
Definition:The initial step of transcription, consisting of the assembly of the RNA polymerase preinitiation complex (PIC) at a gene promoter, as well as the formation of the first few bonds of the RNA transcript. Transcription initiation includes abortive initiation events, which occur when the first few nucleotides are repeatedly synthesized and then released, and ends when promoter clearance takes place.
Comment:Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms:exact_synonym: DNA-dependent RNA polymerase complex assembly at promoter;   initiation of DNA-dependent transcription
 narrow_synonym: transcription initiation from bacterial-type RNA polymerase promoter
 related_synonym: transcription initiation factor activity;   transcription initiation, DNA-dependent
 alt_id: GO:0001123



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DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IDA RGD PMID:3306601 RGD:69897 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 involved_in ISO
IEA
(PMID:10567404)
GO_REF:0000107
RGD
Ensembl
PMID:10567404 GO_REF:0000107 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268
JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:50,053,289...50,070,514
Ensembl chr 6:50,053,289...50,070,514
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (MGI:63283|PMID:8413268) RGD PMID:8413268 MGI:63283 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:9836642) RGD PMID:9836642 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:9212049), (PMID:9603525) RGD PMID:9212049 PMID:9603525 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf9b TATA-box binding protein associated factor 9b involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604
JBrowse link
G Tbp TATA box binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Tbpl1 TATA-box binding protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122
JBrowse link
G Tbpl2 TATA box binding protein-like 2 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:6,771,825...6,793,281
Ensembl chr 3:6,772,419...6,793,231
JBrowse link
DNA-templated transcription open complex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taf8 TATA-box binding protein associated factor 8 acts_upstream_of_or_within ISO (PMID:14580349) RGD PMID:14580349 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
negative regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Morc1 MORC family CW-type zinc finger 1 acts_upstream_of_or_within ISO MGI:1857787 (MGI:5694015|PMID:25503965) RGD PMID:25503965 MGI:5694015 NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO (PMID:8524305) RGD PMID:8524305 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA
(PMID:8524305)
GO_REF:0000107
RGD
Ensembl
PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
negative regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnbip1 catenin, beta-interacting protein 1 involved_in ISO (MGI:4821083|PMID:11751639) RGD PMID:11751639 MGI:4821083 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:10692439) RGD PMID:10692439 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:29203640) RGD PMID:29203640 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (MGI:6106288|PMID:29138493) RGD PMID:29138493 MGI:6106288 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
JBrowse link
G Zfp451 zinc finger protein 451 involved_in ISO
IBA
(PMID:24324267)
GO_REF:0000033
RGD
GO_Central
PMID:24324267 GO_REF:0000033 NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652
JBrowse link
G Zfp473 zinc finger protein 473 IMP RGD PMID:12748187 RGD:1299608 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325
JBrowse link
positive regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bclaf1 BCL2-associated transcription factor 1 involved_in ISO (PMID:17938203) RGD PMID:17938203 NCBI chr 1:15,088,436...15,117,666
Ensembl chr 1:15,070,894...15,148,832
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha involved_in ISO (PMID:28186500) RGD PMID:28186500 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit involved_in ISO (PMID:23027619) RGD PMID:23027619 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit involved_in ISO (PMID:23027619) RGD PMID:23027619 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in ISO
IEA
(PMID:12204775), (PMID:8995290)
GO_REF:0000107
RGD
Ensembl
PMID:8995290 PMID:12204775 GO_REF:0000107 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Setx senataxin involved_in ISO (PMID:21700224) RGD PMID:21700224 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17332325) RGD PMID:17332325 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (MGI:62922|PMID:8215422) RGD PMID:8215422 MGI:62922 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993
JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:5317044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:24289924)
GO_REF:0000107
RGD
Ensembl
PMID:24289924 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (MGI:3820325|PMID:19056892) RGD PMID:19056892 MGI:3820325 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
positive regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO
GO_REF:0000024
(PMID:21993297)
UniProt
RGD
PMID:21993297 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:5314556 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102|MGI:99135 (MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:5314556 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 involved_in ISO (PMID:11030333) RGD PMID:11030333 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO (PMID:11030333) RGD PMID:11030333 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G Hnf1a HNF1 homeobox A involved_in ISO UniProtKB:P35680 (PMID:15355349) RGD PMID:15355349 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Hnf1b HNF1 homeobox B involved_in ISO
IEA
(PMID:15355349)
GO_REF:0000107
RGD
Ensembl
PMID:15355349 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Irf8 interferon regulatory factor 8 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
ISO (MGI:5448615|PMID:22942423) RGD PMID:22942423 MGI:5448615 NCBI chr19:48,790,581...48,812,363
Ensembl chr19:48,790,588...48,811,829
JBrowse link
G LOC103693281 activated RNA polymerase II transcriptional coactivator p15 pseudogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:12,858,465...12,858,878
Ensembl chr15:12,858,465...12,858,845
Ensembl chr15:12,858,465...12,858,845
JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:12218053), (PMID:16314496)
UniProt
RGD
PMID:12218053 PMID:16314496 GO_REF:0000024 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Med12 mediator complex subunit 12 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387
JBrowse link
G Med13 mediator complex subunit 13 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr10:71,086,978...71,176,535
Ensembl chr10:71,090,516...71,177,242
JBrowse link
G Med14 mediator complex subunit 14 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr  X:10,036,749...10,127,910
Ensembl chr  X:10,036,805...10,126,240
JBrowse link
G Med16 mediator complex subunit 16 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 7:9,798,641...9,811,172
Ensembl chr 7:9,798,668...9,811,172
JBrowse link
G Med17 mediator complex subunit 17 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 8:12,101,594...12,120,592
Ensembl chr 8:12,101,594...12,120,592
JBrowse link
G Med24 mediator complex subunit 24 involved_in ISO
IBA
IEA
(PMID:12218053)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:12218053 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,664,609...83,702,315
Ensembl chr10:83,664,609...83,690,123
JBrowse link
G Med30 mediator complex subunit 30 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 7:84,004,735...84,026,474
Ensembl chr 7:84,004,722...84,026,595
JBrowse link
G Med4 mediator complex subunit 4 involved_in ISO
IEA
(PMID:12218053)
GO_REF:0000107
RGD
Ensembl
PMID:12218053 GO_REF:0000107 NCBI chr15:48,696,542...48,706,818
Ensembl chr15:48,696,511...48,706,820
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:6377809 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO
IEA
(MGI:3768909|PMID:16322095)
GO_REF:0000107
RGD
Ensembl
PMID:16322095 GO_REF:0000107 MGI:3768909 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
JBrowse link
G Nfkbia NFKB inhibitor alpha involved_in ISO (MGI:3768909|PMID:16322095) RGD PMID:16322095 MGI:3768909 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:83559|PMID:8887666)
Ensembl
RGD
PMID:8887666 GO_REF:0000107 MGI:83559 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO
IBA
(PMID:17925232)
GO_REF:0000033
(MGI:4354659|PMID:19583951), (MGI:4821506|PMID:20671152)
RGD
GO_Central
PMID:17925232 PMID:19583951 PMID:20671152 GO_REF:0000033 MGI:4354659 MGI:4821506 NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:6377809 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Srf serum response factor involved_in ISO (PMID:8887666) RGD PMID:8887666 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Sub1 SUB1 regulator of transcription involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436
Ensembl chr 2:61,005,666...61,020,436
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IEA
(PMID:11583621), (PMID:18628956)
GO_REF:0000107
(PMID:17884155)
RGD
Ensembl
PMID:11583621 PMID:17884155 PMID:18628956 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IEA
(PMID:17884155)
GO_REF:0000107
RGD
Ensembl
PMID:17884155 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1100494 (MGI:5314556|PMID:22323595) RGD PMID:22323595 MGI:5314556 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in ISO (MGI:6106288|PMID:29138493) RGD PMID:29138493 MGI:6106288 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
regulation of DNA-templated transcription initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (MGI:63283|PMID:8413268) RGD PMID:8413268 MGI:63283 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo1 forkhead box O1 involved_in IMP PMID:19483080 UniProt PMID:19483080 RGD:401901209 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
JBrowse link
regulation of transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pwwp2a PWWP domain containing 2A involved_in ISO (MGI:6867108|PMID:33235983) RGD PMID:33235983 MGI:6867108 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308
JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
JBrowse link
G Polr1e RNA polymerase I subunit E acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:1928312|PMID:8641287)
GO_REF:0000033
RGD
GO_Central
PMID:8641287 GO_REF:0000033 MGI:1928312 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
IEA
ISS
(PMID:21921199)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21921199 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593
JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971
JBrowse link
G Tbp TATA box binding protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015889.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:78,776,373...78,776,700 JBrowse link
G Dr1 down-regulator of transcription 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638
JBrowse link
G ENSRNOG00000064241 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G ENSRNOG00000067796 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr15:22,674,189...22,674,524 JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:9841876)
Ensembl
RGD
PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IBA
IEA
(PMID:7958899), (PMID:8626665)
GO_REF:0000033
GO_REF:0000118
RGD
GO_Central
TreeGrafter
PMID:7958899 PMID:8626665 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:3029109), (PMID:8413225), (PMID:9841876)
Ensembl
GO_Central
TreeGrafter
UniProt
RGD
PMID:3029109 PMID:8413225 PMID:9841876 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
MGI:3606185 (MGI:5918349|PMID:28893950)
RGD PMID:27007846 PMID:28893950 MGI:5918349 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO
IBA
IEA
(PMID:27007846)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002
RGD
GO_Central
TreeGrafter
InterPro
PMID:27007846 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
JBrowse link
G Taf11l1 TATA-box binding protein associated factor 11 like 1 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO
IBA
(PMID:27007846)
GO_REF:0000033
RGD
GO_Central
PMID:27007846 GO_REF:0000033 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IBA
IEA
(PMID:27007846)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:27007846 GO_REF:0000033 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO
IBA
(PMID:27007846)
GO_REF:0000033
RGD
GO_Central
PMID:27007846 GO_REF:0000033 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023
JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IBA
IEA
(PMID:27007846)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
RGD
GO_Central
TreeGrafter
Ensembl
PMID:27007846 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:27007846), (PMID:9841876) RGD PMID:9841876 PMID:27007846 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:31,378,407...31,470,140
Ensembl chr 2:31,378,924...31,470,119
JBrowse link
transcription initiation at mitochondrial promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polrmt RNA polymerase mitochondrial involved_in ISO (PMID:29149603) RGD PMID:29149603 NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Tfam transcription factor A, mitochondrial involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000118
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
TreeGrafter
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
JBrowse link
transcription initiation at RNA polymerase I promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in ISS
IEA
IBA
ISO
PMID:9582279
GO_REF:0000118
GO_REF:0000033
(MGI:3711373|PMID:11139612)
(PMID:9582279)
TreeGrafter
GO_Central
RGD
PMID:9582279 PMID:11139612 PMID:9582279 GO_REF:0000033 GO_REF:0000118 MGI:3711373, RGD:8554461 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120
JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
JBrowse link
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:16809778) RGD PMID:16809778 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Polr1g RNA polymerase I subunit G involved_in IEA
ISO
GO_REF:0000107
(PMID:16809778)
Ensembl
RGD
PMID:16809778 GO_REF:0000107 NCBI chr 1:79,007,490...79,010,766
Ensembl chr 1:79,007,490...79,010,766
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3584037 (MGI:3583493|PMID:15989966)
(PMID:11250903)
GO_REF:0000033
RGD
GO_Central
PMID:11250903 PMID:15989966 GO_REF:0000033 MGI:3583493 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO UniProtKB:P17480|UniProtKB:Q15572 (PMID:12498690) RGD PMID:12498690 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (MGI:72087|PMID:7720715) RGD PMID:7720715 MGI:72087 NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:12498690), (PMID:16809778), (PMID:16858408)
UniProt
RGD
PMID:12498690 PMID:16809778 PMID:16858408 GO_REF:0000024 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
JBrowse link
transcription initiation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
JBrowse link
G Ccnh cyclin H involved_in IEA
ISO
GO_REF:0000107
(PMID:7533895), (PMID:8692841)
Ensembl
RGD
PMID:7533895 PMID:8692841 GO_REF:0000107 NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819
JBrowse link
G Cdk7 cyclin-dependent kinase 7 involved_in IEA
ISO
GO_REF:0000107
(PMID:7533895), (PMID:8692841)
Ensembl
RGD
PMID:7533895 PMID:8692841 GO_REF:0000107 NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Eloa elongin A involved_in ISO
IEA
(PMID:7660122)
GO_REF:0000107
RGD
Ensembl
PMID:7660122 GO_REF:0000107 NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
JBrowse link
G Elob elongin B involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
JBrowse link
G Eloc elongin C involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
JBrowse link
G ENSRNOG00000067613 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 Ensembl chr17:14,611,967...14,612,710 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA
ISO
GO_REF:0000107
(PMID:8692841)
Ensembl
RGD
PMID:8692841 GO_REF:0000107 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA
ISO
IBA
GO_REF:0000002
(PMID:8692841)
GO_REF:0000118
GO_REF:0000033
InterPro
RGD
TreeGrafter
GO_Central
PMID:8692841 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511
JBrowse link
G Gtf2a1l general transcription factor 2A subunit 1 like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO (PMID:7958899) RGD PMID:7958899 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G Gtf2b general transcription factor IIB involved_in ISO
IBA
ISS
(PMID:12931194), (PMID:3029109), (PMID:9420329)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:3029109 PMID:9420329 PMID:12931194 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371
JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in ISO
IEA
IBA
(PMID:15351637), (PMID:7929273)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002
RGD
TreeGrafter
GO_Central
InterPro
PMID:7929273 PMID:15351637 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 involved_in IDA
IBA
IEA
ISO
PMID:7929273
GO_REF:0000033
GO_REF:0000117
(PMID:15351637)
GO_Central
UniProt
RGD
PMID:15351637 PMID:7929273 GO_REF:0000033 GO_REF:0000117, RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:8692841)
Ensembl
RGD
PMID:8692841 GO_REF:0000107 NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 involved_in ISO (PMID:10924514) RGD PMID:10924514 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in IEA
ISO
GO_REF:0000107
(PMID:8692841)
Ensembl
RGD
PMID:8692841 GO_REF:0000107 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
JBrowse link
G Polr2i RNA polymerase II subunit I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO UniProtKB:Q60544 (PMID:17996705), (PMID:25412659) RGD PMID:17996705 PMID:25412659 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IBA
(PMID:9603525)
GO_REF:0000033
RGD
GO_Central
PMID:9603525 GO_REF:0000033 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO
IBA
(PMID:10409744), (PMID:9418870)
GO_REF:0000033
RGD
GO_Central
PMID:9418870 PMID:10409744 GO_REF:0000033 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO
IBA
(PMID:12771217), (PMID:9603525)
GO_REF:0000033
RGD
GO_Central
PMID:9603525 PMID:12771217 GO_REF:0000033 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO
IBA
(PMID:9045704), (PMID:9603525)
GO_REF:0000033
RGD
GO_Central
PMID:9045704 PMID:9603525 GO_REF:0000033 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:15328371), (PMID:9603525) RGD PMID:9603525 PMID:15328371 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:16407123), (PMID:9603525) RGD PMID:9603525 PMID:16407123 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf8l1 TATA-box binding protein associated factor 8 like 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 6:99,293,907...99,295,840
Ensembl chr 6:99,294,126...99,295,052
JBrowse link
transcription initiation at RNA polymerase III promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crcp CGRP receptor component involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000118
InterPro
GO_Central
TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr12:26,623,968...26,659,756
Ensembl chr12:26,623,976...26,768,225
JBrowse link
G Gtf3c1 general transcription factor IIIC subunit 1 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033
InterPro
TreeGrafter
GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:180,203,995...180,270,201
Ensembl chr 1:180,203,995...180,270,201
JBrowse link
G Gtf3c4 general transcription factor IIIC subunit 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:12,154,803...12,172,795
Ensembl chr 3:12,154,805...12,172,725
JBrowse link
G Gtf3c5 general transcription factor IIIC subunit 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:11,893,867...11,914,187
Ensembl chr 3:11,893,875...11,914,180
JBrowse link
G Polr3h RNA polymerase III subunit H involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,429,434...113,439,743
Ensembl chr 7:113,429,451...113,439,778
JBrowse link
G Vkorc1l1 vitamin K epoxide reductase complex, subunit 1-like 1 involved_in IEA GO_REF:0000002
GO_REF:0000118
InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr12:26,717,959...26,768,193
Ensembl chr12:26,623,976...26,768,225
JBrowse link
transcription initiation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ash2l ASH2 like histone lysine methyltransferase complex subunit involved_in ISO (PMID:19556245) RGD PMID:19556245 NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061
JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO
IEA
(PMID:10821277)
GO_REF:0000107
RGD
Ensembl
PMID:10821277 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:182,515,335...182,520,007
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Brd7 bromodomain containing 7 involved_in ISO (PMID:20228809) RGD PMID:20228809 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494
JBrowse link
G Ctcfl1 CCCTC-binding factor like 1 involved_in ISO (PMID:18765639) RGD PMID:18765639 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:19556245)
UniProt
RGD
PMID:19556245 GO_REF:0000024 NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432
JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:25818647), (PMID:27256286) RGD PMID:25818647 PMID:27256286 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Fam47a family with sequence similarity 47, member A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:42,762,231...42,763,887
Ensembl chr  X:42,762,229...42,763,883
JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:15,485,537...15,521,599
Ensembl chr14:15,485,127...15,521,775
JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in ISO
IEA
(PMID:30970244)
GO_REF:0000107
RGD
Ensembl
PMID:30970244 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO (PMID:21856198)
(MGI:4946451|PMID:21149574)
RGD PMID:21149574 PMID:21856198 MGI:4946451 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in IEA
ISO
GO_REF:0000107
(PMID:15960975)
Ensembl
RGD
PMID:15960975 GO_REF:0000107 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Kdm1b lysine demethylase 1B involved_in ISO (PMID:30970244) RGD PMID:30970244 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Kdm2a lysine demethylase 2A involved_in ISO (MGI:6694658|PMID:32584788) RGD PMID:32584788 MGI:6694658 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:15960975), (PMID:19556245) RGD PMID:15960975 PMID:19556245 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Lcor ligand dependent nuclear receptor corepressor involved_in ISO (MGI:6159308|PMID:29628311) RGD PMID:29628311 MGI:6159308 NCBI chr 1:240,298,565...240,405,627
Ensembl chr 1:240,298,563...240,402,448
JBrowse link
G LOC102552474 protein FAM47E-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:13,775,705...13,777,481
Ensembl chr  X:13,776,114...13,777,409
JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:25526730) RGD PMID:25526730 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Men1 menin 1 involved_in ISO
IEA
(PMID:14992727)
GO_REF:0000107
(MGI:3035842|PMID:14992727)
RGD
Ensembl
PMID:14992727 GO_REF:0000107 MGI:3035842 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Myocd myocardin involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3525929|PMID:15601857)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:15601857 GO_REF:0000024 GO_REF:0000107 MGI:3525929 NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in ISO (PMID:31061526) RGD PMID:31061526 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:166,820,150...166,831,949
Ensembl chr 5:166,820,161...166,831,949
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (MGI:5688228|PMID:26134869) RGD PMID:26134869 MGI:5688228 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in ISO
IEA
(PMID:22853951)
GO_REF:0000107
RGD
Ensembl
PMID:22853951 GO_REF:0000107 NCBI chr 5:153,209,053...153,251,632
Ensembl chr 5:153,209,053...153,251,632
JBrowse link
G Phf2 PHD finger protein 2 involved_in ISO (MGI:6716956|PMID:22921934) RGD PMID:22921934 MGI:6716956 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit involved_in ISO (PMID:19556245) RGD PMID:19556245 NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107
JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in ISO UniProtKB:Q92793 (PMID:11443112) RGD PMID:11443112 NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO
ISS
(PMID:23894581)
GO_REF:0000024
RGD
UniProt
PMID:23894581 GO_REF:0000024 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781
JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (PMID:28655758) RGD PMID:28655758 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (MGI:6881858|PMID:34910916) RGD PMID:34910916 MGI:6881858 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) RGD PMID:12917342 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO
IEA
ISS
(PMID:33951726)
GO_REF:0000107
(MGI:6508514|PMID:30171019)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:30171019 PMID:33951726 GO_REF:0000024 GO_REF:0000107 MGI:6508514 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:16322561)
GO_REF:0000107
RGD
Ensembl
PMID:16322561 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31061526) RGD PMID:31061526 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Usp21 ubiquitin specific peptidase 21 involved_in ISS
ISO
GO_REF:0000024
(MGI:3846030|PMID:18172164)
UniProt
RGD
PMID:18172164 GO_REF:0000024 MGI:3846030 NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126) RGD PMID:26974126 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Wbp2 WW domain binding protein 2 involved_in ISO
IEA
(PMID:23233354)
GO_REF:0000107
RGD
Ensembl
PMID:23233354 GO_REF:0000107 NCBI chr10:101,312,476...101,320,775
Ensembl chr10:101,312,446...101,320,736
JBrowse link
G Wdr5 WD repeat domain 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19556245)
UniProt
Ensembl
RGD
PMID:19556245 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in ISO (MGI:6287047|PMID:30842416), (MGI:7260820|PMID:35167494) RGD PMID:30842416 PMID:35167494 MGI:6287047 MGI:7260820 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
transcription open complex formation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
JBrowse link
transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (MGI:3796491|PMID:18319258) RGD PMID:18319258 MGI:3796491 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723
JBrowse link
transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO
GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:10318856)
Ensembl
GO_Central
TreeGrafter
UniProt
RGD
PMID:10318856 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11721
      organic substance metabolic process 11216
        macromolecule metabolic process 9469
          macromolecule biosynthetic process 7368
            RNA biosynthetic process 3387
              DNA-templated transcription initiation 172
                DNA-templated transcription open complex formation + 2
                DNA-templated transcriptional start site selection + 2
                negative regulation of DNA-templated transcription initiation + 9
                positive regulation of DNA-templated transcription initiation + 57
                regulation of DNA-templated transcription initiation + 68
                transcription initiation at RNA polymerase I promoter + 14
                transcription initiation at RNA polymerase II promoter + 134
                transcription initiation at RNA polymerase III promoter + 7
                transcription initiation at mitochondrial promoter 4
                transcription preinitiation complex assembly + 48
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11721
      cellular metabolic process 10285
        cellular nitrogen compound metabolic process 6735
          nucleobase-containing compound metabolic process 5709
            nucleic acid metabolic process 5116
              RNA metabolic process 4520
                RNA biosynthetic process 3387
                  DNA-templated transcription 3363
                    DNA-templated transcription initiation 172
                      DNA-templated transcription open complex formation + 2
                      DNA-templated transcriptional start site selection + 2
                      negative regulation of DNA-templated transcription initiation + 9
                      positive regulation of DNA-templated transcription initiation + 57
                      regulation of DNA-templated transcription initiation + 68
                      transcription initiation at RNA polymerase I promoter + 14
                      transcription initiation at RNA polymerase II promoter + 134
                      transcription initiation at RNA polymerase III promoter + 7
                      transcription initiation at mitochondrial promoter 4
                      transcription preinitiation complex assembly + 48
paths to the root