ONTOLOGY REPORT - ANNOTATIONS
Term: DNA-templated transcription initiation
Accession: GO:0006352
browse the term
Definition: The initial step of transcription, consisting of the assembly of the RNA polymerase preinitiation complex (PIC) at a gene promoter, as well as the formation of the first few bonds of the RNA transcript. Transcription initiation includes abortive initiation events, which occur when the first few nucleotides are repeatedly synthesized and then released, and ends when promoter clearance takes place.
Comment: Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms: exact_synonym: DNA-dependent RNA polymerase complex assembly at promoter; initiation of DNA-dependent transcription
narrow_synonym: transcription initiation from bacterial-type RNA polymerase promoter
related_synonym: transcription initiation factor activity; transcription initiation, DNA-dependent
alt_id: GO:0001123
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Brf1
BRF1, RNA polymerase III transcription initiation factor subunit
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
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Brf2
BRF2, RNA polymerase III transcription initiation factor subunit
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
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Myc
MYC proto-oncogene, bHLH transcription factor
IDA
RGD
PMID:3306601
RGD:69897
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Ncoa6
nuclear receptor coactivator 6
involved_in
ISO IEA
(PMID:10567404) GO_REF:0000107
RGD Ensembl
PMID:10567404
GO_REF:0000107
NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268
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Polr1f
RNA polymerase I subunit F
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 6:50,053,289...50,070,514
Ensembl chr 6:50,053,289...50,070,514
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Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within
ISO
(MGI:63283|PMID:8413268)
RGD
PMID:8413268
MGI:63283
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
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Rsf1
remodeling and spacing factor 1
involved_in
ISO
(PMID:9836642)
RGD
PMID:9836642
NCBI chr 1:151,892,055...152,015,089
Ensembl chr 1:151,892,434...152,009,051
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Smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
involved_in
ISO
(PMID:9836642)
RGD
PMID:9836642
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:9212049), (PMID:9603525)
RGD
PMID:9212049 PMID:9603525
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
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Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
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Taf9b
TATA-box binding protein associated factor 9b
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr X:71,289,290...71,300,142
Ensembl chr X:71,289,290...71,300,604
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Tbp
TATA box binding protein
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
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Tbpl1
TATA-box binding protein like 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122 Ensembl chr 1:22,778,459...22,803,122
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Tbpl2
TATA box binding protein-like 2
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
InterPro GO_Central TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr 3:6,771,825...6,793,281
Ensembl chr 3:6,772,419...6,793,231
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Taf8
TATA-box binding protein associated factor 8
acts_upstream_of_or_within
ISO
(PMID:14580349)
RGD
PMID:14580349
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Morc1
MORC family CW-type zinc finger 1
acts_upstream_of_or_within
ISO
MGI:1857787 (MGI:5694015|PMID:25503965)
RGD
PMID:25503965
MGI:5694015
NCBI chr11:52,178,769...52,384,255
Ensembl chr11:52,178,769...52,384,255
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Thra
thyroid hormone receptor alpha
involved_in
ISO
(PMID:8524305)
RGD
PMID:8524305
NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
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Hmgb1
high mobility group box 1
involved_in
ISO
(PMID:8006019)
RGD
PMID:8006019
NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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Thra
thyroid hormone receptor alpha
involved_in
ISO IEA
(PMID:8524305) GO_REF:0000107
RGD Ensembl
PMID:8524305
GO_REF:0000107
NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
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Ctnnbip1
catenin, beta-interacting protein 1
involved_in
ISO
(MGI:4821083|PMID:11751639)
RGD
PMID:11751639
MGI:4821083
NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
involved_in
ISO
(PMID:10692439)
RGD
PMID:10692439
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Myc
MYC proto-oncogene, bHLH transcription factor
involved_in
ISO
(PMID:29203640)
RGD
PMID:29203640
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Pcid2
PCI domain containing 2
involved_in
ISO
(MGI:6106288|PMID:29138493)
RGD
PMID:29138493
MGI:6106288
NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
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Zfp451
zinc finger protein 451
involved_in
ISO IBA
(PMID:24324267) GO_REF:0000033
RGD GO_Central
PMID:24324267
GO_REF:0000033
NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652
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Zfp473
zinc finger protein 473
IMP
RGD
PMID:12748187
RGD:1299608
NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325
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Bclaf1
BCL2-associated transcription factor 1
involved_in
ISO
(PMID:17938203)
RGD
PMID:17938203
NCBI chr 1:15,088,436...15,117,666
Ensembl chr 1:15,070,894...15,148,832
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Cebpa
CCAAT/enhancer binding protein alpha
involved_in
ISO
(PMID:28186500)
RGD
PMID:28186500
NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
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Fosl1
FOS like 1, AP-1 transcription factor subunit
involved_in
ISO
(PMID:23027619)
RGD
PMID:23027619
NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930
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Jun
Jun proto-oncogene, AP-1 transcription factor subunit
involved_in
ISO
(PMID:23027619)
RGD
PMID:23027619
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
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Mitf
melanocyte inducing transcription factor
involved_in
ISO IEA
(PMID:12204775), (PMID:8995290) GO_REF:0000107
RGD Ensembl
PMID:8995290 PMID:12204775
GO_REF:0000107
NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
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Setx
senataxin
involved_in
ISO
(PMID:21700224)
RGD
PMID:21700224
NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
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Twist1
twist family bHLH transcription factor 1
involved_in
ISO
(PMID:17332325)
RGD
PMID:17332325
NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
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Ahr
aryl hydrocarbon receptor
acts_upstream_of_or_within
ISO
(MGI:62922|PMID:8215422)
RGD
PMID:8215422
MGI:62922
NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
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Cand1
cullin-associated and neddylation-dissociated 1
involved_in
IDA
PMID:10567521
UniProt
PMID:10567521
RGD:8553447
NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993
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Creb1
cAMP responsive element binding protein 1
IMP
RGD
PMID:16891311
RGD:1625706
NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
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Ikzf1
IKAROS family zinc finger 1
acts_upstream_of_or_within
ISO
MGI:2158690 (MGI:5317044|PMID:21245044)
RGD
PMID:21245044
MGI:5317044
NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
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Psmc6
proteasome 26S subunit, ATPase 6
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055
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Tp53
tumor protein p53
involved_in
ISO IEA
(PMID:24289924) GO_REF:0000107
RGD Ensembl
PMID:24289924
GO_REF:0000107
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Wnt10b
Wnt family member 10B
acts_upstream_of_or_within
ISO
(MGI:3820325|PMID:19056892)
RGD
PMID:19056892
MGI:3820325
NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
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Dhx36
DEAH-box helicase 36
involved_in
ISS ISO
GO_REF:0000024 (PMID:21993297)
UniProt RGD
PMID:21993297
GO_REF:0000024
NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
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Ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit
acts_upstream_of_or_within
ISO
(MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
acts_upstream_of_or_within
ISO
MGI:1932102|MGI:99135 (MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Gtf2a1
general transcription factor 2A subunit 1
involved_in
ISO
(PMID:11030333)
RGD
PMID:11030333
NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511
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Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO
(PMID:11030333)
RGD
PMID:11030333
NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
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Hnf1a
HNF1 homeobox A
involved_in
ISO
UniProtKB:P35680 (PMID:15355349)
RGD
PMID:15355349
NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
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Hnf1b
HNF1 homeobox B
involved_in
ISO IEA
(PMID:15355349) GO_REF:0000107
RGD Ensembl
PMID:15355349
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Irf8
interferon regulatory factor 8
acts_upstream_of_or_within NOT|acts_upstream_of_or_within
ISO
(MGI:5448615|PMID:22942423)
RGD
PMID:22942423
MGI:5448615
NCBI chr19:48,790,581...48,812,363
Ensembl chr19:48,790,588...48,811,829
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LOC103693281
activated RNA polymerase II transcriptional coactivator p15 pseudogene
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr15:12,858,465...12,858,878
Ensembl chr15:12,858,465...12,858,845 Ensembl chr15:12,858,465...12,858,845
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Med1
mediator complex subunit 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:12218053), (PMID:16314496)
UniProt RGD
PMID:12218053 PMID:16314496
GO_REF:0000024
NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
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Med12
mediator complex subunit 12
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr X:66,404,807...66,427,775
Ensembl chr X:66,404,760...66,428,387
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Med13
mediator complex subunit 13
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr10:71,086,978...71,176,535
Ensembl chr10:71,090,516...71,177,242
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Med14
mediator complex subunit 14
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr X:10,036,749...10,127,910
Ensembl chr X:10,036,805...10,126,240
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Med16
mediator complex subunit 16
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 7:9,798,641...9,811,172
Ensembl chr 7:9,798,668...9,811,172
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Med17
mediator complex subunit 17
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 8:12,101,594...12,120,592
Ensembl chr 8:12,101,594...12,120,592
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Med24
mediator complex subunit 24
involved_in
ISO IBA IEA
(PMID:12218053) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:12218053
GO_REF:0000033 GO_REF:0000107
NCBI chr10:83,664,609...83,702,315
Ensembl chr10:83,664,609...83,690,123
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Med30
mediator complex subunit 30
involved_in
ISO
(PMID:12218053)
RGD
PMID:12218053
NCBI chr 7:84,004,735...84,026,474
Ensembl chr 7:84,004,722...84,026,595
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Med4
mediator complex subunit 4
involved_in
ISO IEA
(PMID:12218053) GO_REF:0000107
RGD Ensembl
PMID:12218053
GO_REF:0000107
NCBI chr15:48,696,542...48,706,818
Ensembl chr15:48,696,511...48,706,820
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Myc
MYC proto-oncogene, bHLH transcription factor
involved_in
ISO
(MGI:6377809|PMID:26691508)
RGD
PMID:26691508
MGI:6377809
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Nfkb1
nuclear factor kappa B subunit 1
involved_in
ISO IEA
(MGI:3768909|PMID:16322095) GO_REF:0000107
RGD Ensembl
PMID:16322095
GO_REF:0000107 MGI:3768909
NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
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Nfkbia
NFKB inhibitor alpha
involved_in
ISO
(MGI:3768909|PMID:16322095)
RGD
PMID:16322095
MGI:3768909
NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
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Nkx2-5
NK2 homeobox 5
involved_in
IEA ISO
GO_REF:0000107 (MGI:83559|PMID:8887666)
Ensembl RGD
PMID:8887666
GO_REF:0000107 MGI:83559
NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
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Paxip1
PAX interacting protein 1
involved_in
ISO IBA
(PMID:17925232) GO_REF:0000033 (MGI:4354659|PMID:19583951), (MGI:4821506|PMID:20671152)
RGD GO_Central
PMID:17925232 PMID:19583951 PMID:20671152
GO_REF:0000033 MGI:4354659 MGI:4821506
NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
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Pou5f1
POU class 5 homeobox 1
involved_in
ISO
(MGI:6377809|PMID:26691508)
RGD
PMID:26691508
MGI:6377809
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Srf
serum response factor
involved_in
ISO
(PMID:8887666)
RGD
PMID:8887666
NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
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Sub1
SUB1 regulator of transcription
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436 Ensembl chr 2:61,005,666...61,020,436
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Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
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Taf11
TATA-box binding protein associated factor 11
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
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Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
G
Taf13
TATA-box binding protein associated factor 13
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
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Taf2
TATA-box binding protein associated factor 2
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
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Taf3
TATA-box binding protein associated factor 3
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf4b
TATA-box binding protein associated factor 4b
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO IEA
(PMID:11583621), (PMID:18628956) GO_REF:0000107 (PMID:17884155)
RGD Ensembl
PMID:11583621 PMID:17884155 PMID:18628956
GO_REF:0000107
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
G
Taf8
TATA-box binding protein associated factor 8
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Taf9
TATA-box binding protein associated factor 9
involved_in
ISO IEA
(PMID:17884155) GO_REF:0000107
RGD Ensembl
PMID:17884155
GO_REF:0000107
NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
G
Tbp
TATA box binding protein
involved_in
ISO
(PMID:17884155)
RGD
PMID:17884155
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
G
Xpa
XPA, DNA damage recognition and repair factor
acts_upstream_of_or_within
ISO
MGI:1100494 (MGI:5314556|PMID:22323595)
RGD
PMID:22323595
MGI:5314556
NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726
G
Znhit1
zinc finger, HIT-type containing 1
involved_in
ISO
(MGI:6106288|PMID:29138493)
RGD
PMID:29138493
MGI:6106288
NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
G
Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within
ISO
(MGI:63283|PMID:8413268)
RGD
PMID:8413268
MGI:63283
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
G
Foxo1
forkhead box O1
involved_in
IMP
PMID:19483080
UniProt
PMID:19483080
RGD:401901209
NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790
G
Pwwp2a
PWWP domain containing 2A
involved_in
ISO
(MGI:6867108|PMID:33235983)
RGD
PMID:33235983
MGI:6867108
NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308
G
Baz2a
bromodomain adjacent to zinc finger domain, 2A
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659
G
Polr1e
RNA polymerase I subunit E
acts_upstream_of_or_within involved_in
ISO IBA
(MGI:1928312|PMID:8641287) GO_REF:0000033
RGD GO_Central
PMID:8641287
GO_REF:0000033 MGI:1928312
NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
G
Rrn3
RRN3 homolog, RNA polymerase I transcription factor
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
G
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
G
Taf1b
TATA-box binding protein associated factor, RNA polymerase I subunit B
involved_in
ISO IEA ISS
(PMID:21921199) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:21921199
GO_REF:0000024 GO_REF:0000107
NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593
G
Taf1c
TATA-box binding protein associated factor, RNA polymerase 1 subunit C
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971
G
Tbp
TATA box binding protein
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
G
Ubtf
upstream binding transcription factor
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
G
AABR07015889.1
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
Ensembl chr14:78,776,373...78,776,700
G
Dr1
down-regulator of transcription 1
involved_in
IBA IEA
GO_REF:0000033 GO_REF:0000118
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638
G
ENSRNOG00000064241
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
Ensembl chr 5:97,975,779...97,977,813
G
ENSRNOG00000067796
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
Ensembl chr15:22,674,189...22,674,524
G
Esr1
estrogen receptor 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:9841876)
Ensembl RGD
PMID:9841876
GO_REF:0000107
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
G
Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO IBA IEA
(PMID:7958899), (PMID:8626665) GO_REF:0000033 GO_REF:0000118
RGD GO_Central TreeGrafter
PMID:7958899 PMID:8626665
GO_REF:0000033 GO_REF:0000118
NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
G
Gtf2b
general transcription factor IIB
involved_in
IEA IBA ISS ISO
GO_REF:0000107 GO_REF:0000033 GO_REF:0000118 GO_REF:0000024 (PMID:3029109), (PMID:8413225), (PMID:9841876)
Ensembl GO_Central TreeGrafter UniProt RGD
PMID:3029109 PMID:8413225 PMID:9841876
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
G
Gtf2f2
general transcription factor IIF subunit 2
IDA
RGD
PMID:7929273
RGD:9681417
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
G
Supt3h
SPT3 homolog, SAGA and STAGA complex component
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706
G
Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
G
Taf10
TATA-box binding protein associated factor 10
involved_in
ISO
(PMID:27007846) MGI:3606185 (MGI:5918349|PMID:28893950)
RGD
PMID:27007846 PMID:28893950
MGI:5918349
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
G
Taf11
TATA-box binding protein associated factor 11
involved_in
ISO IBA IEA
(PMID:27007846) GO_REF:0000033 GO_REF:0000118 GO_REF:0000002
RGD GO_Central TreeGrafter InterPro
PMID:27007846
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
G
Taf11l1
TATA-box binding protein associated factor 11 like 1
involved_in
IEA
GO_REF:0000002 GO_REF:0000118
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563
G
Taf12
TATA-box binding protein associated factor 12
involved_in
ISO IBA
(PMID:27007846) GO_REF:0000033
RGD GO_Central
PMID:27007846
GO_REF:0000033
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
G
Taf13
TATA-box binding protein associated factor 13
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
G
Taf2
TATA-box binding protein associated factor 2
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
G
Taf3
TATA-box binding protein associated factor 3
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
G
Taf4
TATA-box binding protein associated factor 4
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
G
Taf5
TATA-box binding protein associated factor 5
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
G
Taf6
TATA-box binding protein associated factor 6
involved_in
ISO IBA IEA
(PMID:27007846) GO_REF:0000033 GO_REF:0000107
RGD GO_Central Ensembl
PMID:27007846
GO_REF:0000033 GO_REF:0000107
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
G
Taf6l
TATA-box binding protein associated factor 6 like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
G
Taf7
TATA-box binding protein associated factor 7
involved_in
ISO IBA
(PMID:27007846) GO_REF:0000033
RGD GO_Central
PMID:27007846
GO_REF:0000033
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
G
Taf7l
TATA-box binding protein associated factor 7-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:97,660,222...97,675,241
Ensembl chr X:97,660,222...97,675,023
G
Taf7l-ps1
TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401
G
Taf8
TATA-box binding protein associated factor 8
involved_in
ISO
(PMID:27007846)
RGD
PMID:27007846
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
G
Taf9
TATA-box binding protein associated factor 9
involved_in
ISO IBA IEA
(PMID:27007846) GO_REF:0000033 GO_REF:0000118 GO_REF:0000107
RGD GO_Central TreeGrafter Ensembl
PMID:27007846
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
G
Tbp
TATA box binding protein
involved_in
ISO
(PMID:27007846), (PMID:9841876)
RGD
PMID:9841876 PMID:27007846
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
G
Bdp1
B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:31,378,407...31,470,140
Ensembl chr 2:31,378,924...31,470,119
G
Polrmt
RNA polymerase mitochondrial
involved_in
ISO
(PMID:29149603)
RGD
PMID:29149603
NCBI chr 7:9,959,532...9,969,791
Ensembl chr 7:9,959,576...9,969,791
G
Tfam
transcription factor A, mitochondrial
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:20410300), (PMID:29149603)
UniProt GO_Central RGD
PMID:20410300 PMID:29149603
GO_REF:0000024 GO_REF:0000033
NCBI chr20:17,356,243...17,368,293
Ensembl chr20:17,356,197...17,368,292
G
Tfb1m
transcription factor B1, mitochondrial
involved_in
IEA IBA
GO_REF:0000118 GO_REF:0000033
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 1:44,115,240...44,161,737
Ensembl chr 1:44,119,166...44,161,709
G
Tfb2m
transcription factor B2, mitochondrial
involved_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000118 GO_REF:0000033 (PMID:20410300), (PMID:29149603)
UniProt TreeGrafter GO_Central RGD
PMID:20410300 PMID:29149603
GO_REF:0000024 GO_REF:0000033 GO_REF:0000118
NCBI chr13:91,278,889...91,296,709
Ensembl chr13:91,278,898...91,296,657
G
Cavin1
caveolae associated protein 1
involved_in
ISS IEA IBA ISO
PMID:9582279 GO_REF:0000118 GO_REF:0000033 (MGI:3711373|PMID:11139612) (PMID:9582279)
TreeGrafter GO_Central RGD
PMID:9582279 PMID:11139612 PMID:9582279
GO_REF:0000033 GO_REF:0000118 MGI:3711373 , RGD:8554461
NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120
G
Lipe
lipase E, hormone sensitive type
involved_in
ISS
PMID:9582279
UniProt
PMID:9582279
RGD:8554461
NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310
G
Polr1e
RNA polymerase I subunit E
involved_in
ISO
(PMID:16809778)
RGD
PMID:16809778
NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
G
Polr1g
RNA polymerase I subunit G
involved_in
IEA ISO
GO_REF:0000107 (PMID:16809778)
Ensembl RGD
PMID:16809778
GO_REF:0000107
NCBI chr 1:79,007,490...79,010,766
Ensembl chr 1:79,007,490...79,010,766
G
Rrn3
RRN3 homolog, RNA polymerase I transcription factor
acts_upstream_of_or_within involved_in
ISO IBA
MGI:3584037 (MGI:3583493|PMID:15989966) (PMID:11250903) GO_REF:0000033
RGD GO_Central
PMID:11250903 PMID:15989966
GO_REF:0000033 MGI:3583493
NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663
G
Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
UniProtKB:P17480|UniProtKB:Q15572 (PMID:12498690)
RGD
PMID:12498690
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
G
Ttf1
transcription termination factor 1
acts_upstream_of_or_within
ISO
(MGI:72087|PMID:7720715)
RGD
PMID:7720715
MGI:72087
NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257
G
Ubtf
upstream binding transcription factor
involved_in
ISS ISO
GO_REF:0000024 (PMID:12498690), (PMID:16809778), (PMID:16858408)
UniProt RGD
PMID:12498690 PMID:16809778 PMID:16858408
GO_REF:0000024
NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969
G
Brf2
BRF2, RNA polymerase III transcription initiation factor subunit
involved_in
IEA
GO_REF:0000118
TreeGrafter
GO_REF:0000118
NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
G
Ccnh
cyclin H
involved_in
IEA ISO
GO_REF:0000107 (PMID:7533895), (PMID:8692841)
Ensembl RGD
PMID:7533895 PMID:8692841
GO_REF:0000107
NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819
G
Cdk7
cyclin-dependent kinase 7
involved_in
IEA ISO
GO_REF:0000107 (PMID:7533895), (PMID:8692841)
Ensembl RGD
PMID:7533895 PMID:8692841
GO_REF:0000107
NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383
G
Eloa
elongin A
involved_in
ISO IEA
(PMID:7660122) GO_REF:0000107
RGD Ensembl
PMID:7660122
GO_REF:0000107
NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
G
Elob
elongin B
involved_in
ISO
(PMID:7660122)
RGD
PMID:7660122
NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
G
Eloc
elongin C
involved_in
ISO
(PMID:7660122)
RGD
PMID:7660122
NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
G
ENSRNOG00000067613
involved_in
IEA
GO_REF:0000002 GO_REF:0000118
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
Ensembl chr17:14,611,967...14,612,710
G
Ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit
involved_in
IEA ISO
GO_REF:0000107 (PMID:8692841)
Ensembl RGD
PMID:8692841
GO_REF:0000107
NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
G
Ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit
involved_in
IEA ISO IBA
GO_REF:0000002 (PMID:8692841) GO_REF:0000118 GO_REF:0000033
InterPro RGD TreeGrafter GO_Central
PMID:8692841
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
G
Gtf2a1
general transcription factor 2A subunit 1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511
G
Gtf2a1l
general transcription factor 2A subunit 1 like
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472
G
Gtf2a2
general transcription factor 2A subunit 2
involved_in
ISO
(PMID:7958899)
RGD
PMID:7958899
NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569
G
Gtf2b
general transcription factor IIB
involved_in
ISO IBA ISS
(PMID:12931194), (PMID:3029109), (PMID:9420329) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:3029109 PMID:9420329 PMID:12931194
GO_REF:0000024 GO_REF:0000033
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
G
Gtf2e2
general transcription factor IIE subunit 2
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371
G
Gtf2f1
general transcription factor IIF subunit 1
involved_in
ISO IEA IBA
(PMID:15351637), (PMID:7929273) GO_REF:0000118 GO_REF:0000033 GO_REF:0000002
RGD TreeGrafter GO_Central InterPro
PMID:7929273 PMID:15351637
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
G
Gtf2f2
general transcription factor IIF subunit 2
involved_in
IDA IBA IEA ISO
PMID:7929273 GO_REF:0000033 GO_REF:0000117 (PMID:15351637)
GO_Central UniProt RGD
PMID:15351637 PMID:7929273
GO_REF:0000033 GO_REF:0000117, RGD:9681417
NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
G
Gtf2h1
general transcription factor IIH subunit 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:8692841)
Ensembl RGD
PMID:8692841
GO_REF:0000107
NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455
G
Gtf2h2
general transcription factor IIH subunit 2
involved_in
ISO
(PMID:10924514)
RGD
PMID:10924514
NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
G
Gtf2h5
general transcription factor IIH subunit 5
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
G
LOC120103497
general transcription factor IIH subunit 5-like
involved_in
IEA
GO_REF:0000104
UniProt
GO_REF:0000104
NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
G
Maz
MYC associated zinc finger protein
involved_in
ISO
(PMID:1502157)
RGD
PMID:1502157
NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408
G
Mnat1
MNAT1 component of CDK activating kinase
involved_in
IEA ISO
GO_REF:0000107 (PMID:8692841)
Ensembl RGD
PMID:8692841
GO_REF:0000107
NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
G
Polr2d
RNA polymerase II subunit D
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
G
Polr2g
RNA polymerase II subunit G
involved_in
IBA IEA
GO_REF:0000033 GO_REF:0000118
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
G
Polr2i
RNA polymerase II subunit I
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
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Taf1
TATA-box binding protein associated factor 1
involved_in
ISO
UniProtKB:Q60544 (PMID:17996705), (PMID:25412659)
RGD
PMID:17996705 PMID:25412659
NCBI chr X:66,640,915...66,716,543
Ensembl chr X:66,640,982...66,716,543
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Taf10
TATA-box binding protein associated factor 10
involved_in
ISO IBA
(PMID:9603525) GO_REF:0000033
RGD GO_Central
PMID:9603525
GO_REF:0000033
NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
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Taf12
TATA-box binding protein associated factor 12
involved_in
ISO
(PMID:9603525)
RGD
PMID:9603525
NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
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Taf2
TATA-box binding protein associated factor 2
involved_in
ISO IBA
(PMID:10409744), (PMID:9418870) GO_REF:0000033
RGD GO_Central
PMID:9418870 PMID:10409744
GO_REF:0000033
NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
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Taf4
TATA-box binding protein associated factor 4
involved_in
ISO IBA
(PMID:12771217), (PMID:9603525) GO_REF:0000033
RGD GO_Central
PMID:9603525 PMID:12771217
GO_REF:0000033
NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
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Taf4b
TATA-box binding protein associated factor 4b
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
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Taf5
TATA-box binding protein associated factor 5
involved_in
ISO IBA
(PMID:9045704), (PMID:9603525) GO_REF:0000033
RGD GO_Central
PMID:9045704 PMID:9603525
GO_REF:0000033
NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
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Taf6
TATA-box binding protein associated factor 6
involved_in
ISO
(PMID:15328371), (PMID:9603525)
RGD
PMID:9603525 PMID:15328371
NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
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Taf7
TATA-box binding protein associated factor 7
involved_in
ISO
(PMID:16407123), (PMID:9603525)
RGD
PMID:9603525 PMID:16407123
NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
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Taf8
TATA-box binding protein associated factor 8
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
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Taf8l1
TATA-box binding protein associated factor 8 like 1
involved_in
IBA IEA
GO_REF:0000033 GO_REF:0000118
GO_Central TreeGrafter
GO_REF:0000033 GO_REF:0000118
NCBI chr 6:99,293,907...99,295,840
Ensembl chr 6:99,294,126...99,295,052
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Crcp
CGRP receptor component
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
InterPro GO_Central TreeGrafter
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr12:26,623,968...26,659,756
Ensembl chr12:26,623,976...26,768,225
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Gtf3c1
general transcription factor IIIC subunit 1
involved_in
IEA IBA
GO_REF:0000002 GO_REF:0000118 GO_REF:0000033
InterPro TreeGrafter GO_Central
GO_REF:0000002 GO_REF:0000033 GO_REF:0000118
NCBI chr 1:180,203,995...180,270,201
Ensembl chr 1:180,203,995...180,270,201
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Gtf3c4
general transcription factor IIIC subunit 4
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:12,154,803...12,172,795
Ensembl chr 3:12,154,805...12,172,725
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Gtf3c5
general transcription factor IIIC subunit 5
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 3:11,893,867...11,914,187
Ensembl chr 3:11,893,875...11,914,180
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Polr3h
RNA polymerase III subunit H
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:113,429,434...113,439,743
Ensembl chr 7:113,429,451...113,439,778
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Vkorc1l1
vitamin K epoxide reductase complex, subunit 1-like 1
involved_in
IEA
GO_REF:0000002 GO_REF:0000118
InterPro TreeGrafter
GO_REF:0000002 GO_REF:0000118
NCBI chr12:26,717,959...26,768,193
Ensembl chr12:26,623,976...26,768,225
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Ash2l
ASH2 like histone lysine methyltransferase complex subunit
involved_in
ISO
(PMID:19556245)
RGD
PMID:19556245
NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061
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Atf2
activating transcription factor 2
involved_in
ISO IEA
(PMID:10821277) GO_REF:0000107
RGD Ensembl
PMID:10821277
GO_REF:0000107
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
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Bckdk
branched chain ketoacid dehydrogenase kinase
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 1:182,515,335...182,520,007
Ensembl chr 1:182,515,327...182,536,633
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Brd7
bromodomain containing 7
involved_in
ISO
(PMID:20228809)
RGD
PMID:20228809
NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494
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Ctcfl1
CCCTC-binding factor like 1
involved_in
ISO
(PMID:18765639)
RGD
PMID:18765639
NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949
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Dpy30
dpy-30 histone methyltransferase complex regulatory subunit
involved_in
ISS ISO
GO_REF:0000024 (PMID:19556245)
UniProt RGD
PMID:19556245
GO_REF:0000024
NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432
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Ep300
E1A binding protein p300
involved_in
ISO
(PMID:25818647), (PMID:27256286)
RGD
PMID:25818647 PMID:27256286
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Fam47a
family with sequence similarity 47, member A
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:42,762,231...42,763,887
Ensembl chr X:42,762,229...42,763,883
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Fam47e
family with sequence similarity 47, member E
involved_in
ISO
(PMID:33376131)
RGD
PMID:33376131
NCBI chr14:15,485,537...15,521,599
Ensembl chr14:15,485,127...15,521,775
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Glyr1
glyoxylate reductase 1 homolog
involved_in
ISO IEA
(PMID:30970244) GO_REF:0000107
RGD Ensembl
PMID:30970244
GO_REF:0000107
NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637
G
Kat7
lysine acetyltransferase 7
involved_in
ISO
(PMID:21856198) (MGI:4946451|PMID:21149574)
RGD
PMID:21149574 PMID:21856198
MGI:4946451
NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
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Kat8
lysine acetyltransferase 8
involved_in
IEA ISO
GO_REF:0000107 (PMID:15960975)
Ensembl RGD
PMID:15960975
GO_REF:0000107
NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633
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Kdm1b
lysine demethylase 1B
involved_in
ISO
(PMID:30970244)
RGD
PMID:30970244
NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
G
Kdm2a
lysine demethylase 2A
involved_in
ISO
(MGI:6694658|PMID:32584788)
RGD
PMID:32584788
MGI:6694658
NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
G
Kmt2a
lysine methyltransferase 2A
involved_in
ISO
(PMID:15960975), (PMID:19556245)
RGD
PMID:15960975 PMID:19556245
NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
G
Lcor
ligand dependent nuclear receptor corepressor
involved_in
ISO
(MGI:6159308|PMID:29628311)
RGD
PMID:29628311
MGI:6159308
NCBI chr 1:240,298,565...240,405,627
Ensembl chr 1:240,298,563...240,402,448
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LOC102552474
protein FAM47E-like
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr X:13,775,705...13,777,481
Ensembl chr X:13,776,114...13,777,409
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Macroh2a1
macroH2A.1 histone
involved_in
ISO
(PMID:25526730)
RGD
PMID:25526730
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
G
Men1
menin 1
involved_in
ISO IEA
(PMID:14992727) GO_REF:0000107 (MGI:3035842|PMID:14992727)
RGD Ensembl
PMID:14992727
GO_REF:0000107 MGI:3035842
NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
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Myocd
myocardin
involved_in
ISS ISO IEA
GO_REF:0000024 (MGI:3525929|PMID:15601857) GO_REF:0000107
UniProt RGD Ensembl
PMID:15601857
GO_REF:0000024 GO_REF:0000107 MGI:3525929
NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
G
N6amt1
N-6 adenine-specific DNA methyltransferase 1
involved_in
ISO
(PMID:31061526)
RGD
PMID:31061526
NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248
G
Noc2l
NOC2-like nucleolar associated transcriptional repressor
involved_in
ISO
(PMID:16322561)
RGD
PMID:16322561
NCBI chr 5:166,820,150...166,831,949
Ensembl chr 5:166,820,161...166,831,949
G
Nr3c1
nuclear receptor subfamily 3, group C, member 1
involved_in
IMP
PMID:12917342
UniProt
PMID:12917342
RGD:8553888
NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375
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Pabpc1l
poly(A) binding protein, cytoplasmic 1-like
acts_upstream_of_or_within
ISO
MGI:5437740 (MGI:5688228|PMID:26134869)
RGD
PMID:26134869
MGI:5688228
NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
G
Padi2
peptidyl arginine deiminase 2
involved_in
ISO IEA
(PMID:22853951) GO_REF:0000107
RGD Ensembl
PMID:22853951
GO_REF:0000107
NCBI chr 5:153,209,053...153,251,632
Ensembl chr 5:153,209,053...153,251,632
G
Phf2
PHD finger protein 2
involved_in
ISO
(MGI:6716956|PMID:22921934)
RGD
PMID:22921934
MGI:6716956
NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
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Rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit
involved_in
ISO
(PMID:19556245)
RGD
PMID:19556245
NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107
G
Rbm14
RNA binding motif protein 14
involved_in
ISO
UniProtKB:Q92793 (PMID:11443112)
RGD
PMID:11443112
NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665
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Sgf29
SAGA complex associated factor 29
involved_in
ISO ISS
(PMID:23894581) GO_REF:0000024
RGD UniProt
PMID:23894581
GO_REF:0000024
NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781
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Sirt7
sirtuin 7
involved_in
ISO
(PMID:28655758)
RGD
PMID:28655758
NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
G
Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
involved_in
ISO
(MGI:6881858|PMID:34910916)
RGD
PMID:34910916
MGI:6881858
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
G
Smarcb1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
involved_in
ISO
(PMID:22368283)
RGD
PMID:22368283
NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
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Smarcd1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
involved_in
ISO
(PMID:12917342)
RGD
PMID:12917342
NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
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Sphk2
sphingosine kinase 2
involved_in
ISO
(PMID:19729656)
RGD
PMID:19729656
NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
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Spi1
Spi-1 proto-oncogene
involved_in
ISO IEA ISS
(PMID:33951726) GO_REF:0000107 (MGI:6508514|PMID:30171019) GO_REF:0000024
RGD Ensembl UniProt
PMID:30171019 PMID:33951726
GO_REF:0000024 GO_REF:0000107 MGI:6508514
NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
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Tp53
tumor protein p53
involved_in
ISO IEA
(PMID:16322561) GO_REF:0000107
RGD Ensembl
PMID:16322561
GO_REF:0000107
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Trmt112
tRNA methyltransferase activator subunit 11-2
involved_in
ISO
(PMID:31061526)
RGD
PMID:31061526
NCBI chr 1:204,103,298...204,104,151
G
Usp21
ubiquitin specific peptidase 21
involved_in
ISS ISO
GO_REF:0000024 (MGI:3846030|PMID:18172164)
UniProt RGD
PMID:18172164
GO_REF:0000024 MGI:3846030
NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717
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Vps72
vacuolar protein sorting 72 homolog
involved_in
ISO
UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126)
RGD
PMID:26974126
NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
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Wbp2
WW domain binding protein 2
involved_in
ISO IEA
(PMID:23233354) GO_REF:0000107
RGD Ensembl
PMID:23233354
GO_REF:0000107
NCBI chr10:101,312,476...101,320,775
Ensembl chr10:101,312,446...101,320,736
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Wdr5
WD repeat domain 5
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:19556245)
UniProt Ensembl RGD
PMID:19556245
GO_REF:0000024 GO_REF:0000107
NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
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Znhit1
zinc finger, HIT-type containing 1
involved_in
ISO
(MGI:6287047|PMID:30842416), (MGI:7260820|PMID:35167494)
RGD
PMID:30842416 PMID:35167494
MGI:6287047 MGI:7260820
NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
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Gtf2e1
general transcription factor IIE subunit 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
G
Brf1
BRF1, RNA polymerase III transcription initiation factor subunit
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
G
Brf2
BRF2, RNA polymerase III transcription initiation factor subunit
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059
G
Nfkbiz
NFKB inhibitor zeta
involved_in
ISO
MGI:3046930 (MGI:3796491|PMID:18319258)
RGD
PMID:18319258
MGI:3796491
NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723
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Gtf2b
general transcription factor IIB
involved_in
IEA IBA ISS ISO
GO_REF:0000107 GO_REF:0000033 GO_REF:0000118 GO_REF:0000024 (PMID:10318856)
Ensembl GO_Central TreeGrafter UniProt RGD
PMID:10318856
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
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