ONTOLOGY REPORT - ANNOTATIONS

Term:collagen
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Accession:GO:0005581 term browser browse the term
Definition:Any of the various assemblies in which collagen chains form a left-handed triple helix; may assemble into higher order structures.
Synonyms:related_synonym: other collagen
 xref_analog: Wikipedia:Collagen

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collagen term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Adipoq adiponectin, C1Q and collagen domain containing GBrowse link IEA 11 79,908,291 79,911,065 RGD:1600115 UniProtKB
G C1qa complement component 1, q subcomponent, A chain GBrowse link IEA 5 155,662,333 155,665,180 RGD:1600115 UniProtKB
G C1qb complement component 1, q subcomponent, B chain GBrowse link IEA 5 155,647,524 155,653,074 RGD:1600115 UniProtKB
G C1qc complement component 1, q subcomponent, C chain GBrowse link IEA 5 155,656,104 155,659,430 RGD:1600115 UniProtKB
G C1ql1 complement component 1, q subcomponent-like 1 GBrowse link IEA 10 92,109,126 92,116,298 RGD:1600115 UniProtKB
G C1ql3 complement component 1, q subcomponent-like 3 GBrowse link IEA 17 87,275,167 87,285,484 RGD:1600115 UniProtKB
G C1qtnf1 C1q and tumor necrosis factor related protein 1 GBrowse link IEA 10 108,431,984 108,452,099 RGD:1600115 UniProtKB
G C1qtnf2 C1q and tumor necrosis factor related protein 2 GBrowse link IEA 10 28,571,051 28,588,714 RGD:1600115 UniProtKB
G C1qtnf3 C1q and tumor necrosis factor related protein 3 GBrowse link IEA 2 60,303,261 60,325,510 RGD:1600115 UniProtKB
G C1qtnf5 C1q and tumor necrosis factor related protein 5 GBrowse link IEA 8 47,089,564 47,091,434 RGD:1600115 UniProtKB
G C1qtnf6 C1q and tumor necrosis factor related protein 6 GBrowse link IEA 7 116,479,791 116,486,309 RGD:1600115 UniProtKB
G C1qtnf7 C1q and tumor necrosis factor related protein 7 GBrowse link IEA 14 72,631,465 72,645,084 RGD:1600115 UniProtKB
G C1qtnf9 C1q and tumor necrosis factor related protein 9 GBrowse link IEA 15 39,860,425 39,868,076 RGD:1600115 UniProtKB
G Col10a1 collagen, type X, alpha 1 GBrowse link ISO 20 38,725,164 38,731,513 RGD:1624291 RGD
G Col10a1 collagen, type X, alpha 1 GBrowse link IEA 20 38,725,164 38,731,513 RGD:1600115 UniProtKB
G Col11a1 collagen, type XI, alpha 1 GBrowse link ISO 2 209,996,467 210,193,379 RGD:1624291 RGD
G Col11a2 collagen, type XI, alpha 2 GBrowse link ISO 20 4,924,452 4,953,310 RGD:1624291 RGD
G Col15a1 collagen, type XV, alpha 1 GBrowse link IEA 5 63,825,907 63,930,633 RGD:1600115 UniProtKB
G Col17a1 collagen, type XVII, alpha 1 GBrowse link IEA 1 253,012,167 253,059,385 RGD:1600115 UniProtKB
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link IEA 4 29,393,645 29,428,572 RGD:1600115 InterPro
G Col1a2 collagen, type I, alpha 2 GBrowse link IEA 4 29,393,645 29,428,572 RGD:1600115 UniProtKB
G Col23a1 collagen, type XXIII, alpha 1 GBrowse link IEA 10 36,808,661 37,096,560 RGD:1600115 UniProtKB
G Col24a1 collagen, type XXIV, alpha 1 GBrowse link IEA 2 243,490,052 243,727,759 RGD:1600115 InterPro
G Col2a1 collagen, type II, alpha 1 GBrowse link ISO 7 136,679,219 136,707,976 RGD:1624291 RGD
G Col2a1 collagen, type II, alpha 1 GBrowse link ISO 7 136,679,219 136,707,976 RGD:1624291 RGD
G Col3a1 collagen, type III, alpha 1 GBrowse link ISO 9 44,281,582 44,317,831 RGD:1624291 RGD
G Col3a1 collagen, type III, alpha 1 GBrowse link ISO 9 44,281,582 44,317,831 RGD:1624291 RGD
G Col4a3 collagen, type IV, alpha 3 GBrowse link IEA 9 81,910,656 82,036,998 RGD:1600115 UniProtKB
G Col4a3bp collagen, type IV, alpha 3 (Goodpasture antigen) binding protein GBrowse link IEA 2 27,012,330 27,117,057 RGD:1600115 UniProtKB
G Col4a4 collagen, type IV, alpha 4 GBrowse link IEA 9 81,866,835 81,910,088 RGD:1600115 UniProtKB
G Col4a5 collagen, type IV, alpha 5 GBrowse link IEA X 36,918,697 37,130,659 RGD:1600115 UniProtKB
G Col5a1 collagen, type V, alpha 1 GBrowse link ISO 3 6,826,169 6,971,054 RGD:1624291 RGD
G Col5a1 collagen, type V, alpha 1 GBrowse link ISO 3 6,826,169 6,971,054 RGD:1624291 RGD
G Col5a1 collagen, type V, alpha 1 GBrowse link ISO 3 6,826,169 6,971,054 RGD:1624291 RGD
G Col5a1 collagen, type V, alpha 1 GBrowse link IEA 3 6,826,169 6,971,054 RGD:1600115 InterPro
G Col5a2 collagen, type V, alpha 2 GBrowse link ISO 9 44,374,113 44,525,086 RGD:1624291 RGD
G Col6a2 collagen, type VI, alpha 2 GBrowse link IEA 20 12,436,783 12,464,512 RGD:1600115 UniProtKB
G Col8a1 collagen, type VIII, alpha 1 GBrowse link IEA 11 43,604,994 43,733,870 RGD:1600115 UniProtKB
G Col8a2 collagen, type VIII, alpha 2 GBrowse link IEA 5 145,679,681 145,684,323 RGD:1600115 UniProtKB
G Col9a1 collagen, type IX, alpha 1 GBrowse link IEA 9 22,907,157 22,990,836 RGD:1600115 UniProtKB
G Colec10 collectin sub-family member 10 (C-type lectin) GBrowse link IEA 7 90,784,784 90,847,510 RGD:1600115 UniProtKB
G Colec11 collectin sub-family member 11 GBrowse link IEA 6 46,466,449 46,504,760 RGD:1600115 UniProtKB
G Colec12 collectin sub-family member 12 GBrowse link IEA 18 996,297 1,188,288 RGD:1600115 UniProtKB
G Colq collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase GBrowse link IEA 16 6,975,587 7,035,001 RGD:1600115 UniProtKB
G Cthrc1 collagen triple helix repeat containing 1 GBrowse link IEA 7 74,630,044 74,640,324 RGD:1600115 UniProtKB
G Eda ectodysplasin-A GBrowse link IEA X 87,982,303 88,390,680 RGD:1600115 UniProtKB
G Emilin1 elastin microfibril interfacer 1 GBrowse link IEA 6 25,438,941 25,446,658 RGD:1600115 UniProtKB
G Fcn1 ficolin (collagen/fibrinogen domain containing) 1 GBrowse link IEA 3 3,797,916 3,801,117 RGD:1600115 UniProtKB
G Fcnb ficolin B GBrowse link IEA 3 7,010,989 7,019,366 RGD:1600115 UniProtKB
G Gldn gliomedin GBrowse link IEA 8 57,793,743 57,839,274 RGD:1600115 UniProtKB
G LOC100911572 collagen alpha-3(IV) chain-like IEA RGD:1600115 InterPro
G LOC363458 similar to procollagen, type IV, alpha 6 GBrowse link IEA X 37,316,545 37,485,511 RGD:1600115 UniProtKB
G Lox lysyl oxidase GBrowse link ISO 18 47,896,674 47,970,829 RGD:1624291 RGD
G Mbl1 mannose-binding lectin (protein A) 1 GBrowse link IEA 16 17,591,820 17,597,859 RGD:1600115 UniProtKB
G Mbl2 mannose-binding lectin (protein C) 2 GBrowse link IEA 1 233,978,931 233,983,824 RGD:1600115 UniProtKB
G Otol1 otolin 1 GBrowse link IEA 2 160,168,553 160,177,964 RGD:1600115 UniProtKB
G P4ha2 prolyl 4-hydroxylase, alpha polypeptide II GBrowse link IEA 10 39,522,157 39,551,063 RGD:1600115 UniProtKB
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 GBrowse link IEA 5 164,987,252 165,012,581 RGD:1600115 UniProtKB
G Sftpa1 surfactant protein A1 GBrowse link IEA 16 17,570,887 17,574,389 RGD:1600115 UniProtKB
G Sftpd surfactant protein D IEA RGD:1600115 UniProtKB
collagen type I term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link IEA 10 83,622,438 83,639,368 RGD:1600115 ENSEMBL
G Col1a1 collagen, type I, alpha 1 GBrowse link IEA 10 83,622,438 83,639,368 RGD:1600115 ENSEMBL
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
G Col1a2 collagen, type I, alpha 2 GBrowse link ISO 4 29,393,645 29,428,572 RGD:1624291 RGD
collagen type II term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col2a1 collagen, type II, alpha 1 GBrowse link TAS 7 136,679,219 136,707,976 RGD:728118 RGD
G Col2a1 collagen, type II, alpha 1 GBrowse link ISO 7 136,679,219 136,707,976 RGD:1624291 RGD
G Col2a1 collagen, type II, alpha 1 GBrowse link ISO 7 136,679,219 136,707,976 RGD:1624291 RGD
G Col2a1 collagen, type II, alpha 1 GBrowse link ISO 7 136,679,219 136,707,976 RGD:1624291 RGD
G Col2a1 collagen, type II, alpha 1 GBrowse link IEA 7 136,679,219 136,707,976 RGD:1600115 ENSEMBL
G Col2a1 collagen, type II, alpha 1 GBrowse link IEA 7 136,679,219 136,707,976 RGD:1600115 ENSEMBL
collagen type III term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col3a1 collagen, type III, alpha 1 GBrowse link TAS 9 44,281,582 44,317,831 RGD:704391 RGD
G Col3a1 collagen, type III, alpha 1 GBrowse link ISO 9 44,281,582 44,317,831 RGD:1624291 RGD
collagen type IV term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col4a1 collagen, type IV, alpha 1 GBrowse link ISO 16 83,045,183 83,157,835 RGD:1624291 RGD
G Col4a1 collagen, type IV, alpha 1 GBrowse link IEA 16 83,045,183 83,157,835 RGD:1600115 ENSEMBL
G Col4a2 collagen, type IV, alpha 2 GBrowse link ISO 16 82,899,206 83,045,102 RGD:1624291 RGD
G Col4a3 collagen, type IV, alpha 3 GBrowse link ISO 9 81,910,656 82,036,998 RGD:1624291 RGD
G Col4a3 collagen, type IV, alpha 3 GBrowse link ISO 9 81,910,656 82,036,998 RGD:1624291 RGD
G Col4a4 collagen, type IV, alpha 4 GBrowse link ISO 9 81,866,835 81,910,088 RGD:1624291 RGD
G Col4a4 collagen, type IV, alpha 4 GBrowse link ISO 9 81,866,835 81,910,088 RGD:1624291 RGD
G Col4a5 collagen, type IV, alpha 5 GBrowse link ISO X 36,918,697 37,130,659 RGD:1624291 RGD
collagen type IX term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col9a1 collagen, type IX, alpha 1 GBrowse link ISO 9 22,907,157 22,990,836 RGD:1624291 RGD
G Col9a2 collagen, type IX, alpha 2 GBrowse link IEA 5 141,623,365 141,640,224 RGD:1600115 ENSEMBL
G Col9a2 collagen, type IX, alpha 2 GBrowse link ISO 5 141,623,365 141,640,224 RGD:1624291 RGD
G Col9a3 collagen, type IX, alpha 3 GBrowse link ISO 3 169,704,893 169,712,492 RGD:1624291 RGD
G Col9a3 collagen, type IX, alpha 3 GBrowse link IEA 3 169,704,893 169,712,492 RGD:1600115 ENSEMBL
collagen type V term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col5a1 collagen, type V, alpha 1 GBrowse link TAS 3 6,826,169 6,971,054 RGD:70693 RGD
G Col5a1 collagen, type V, alpha 1 GBrowse link ISO 3 6,826,169 6,971,054 RGD:1624291 RGD
G Col5a2 collagen, type V, alpha 2 GBrowse link TAS 9 44,374,113 44,525,086 RGD:70694 RGD
G Col5a2 collagen, type V, alpha 2 GBrowse link ISO 9 44,374,113 44,525,086 RGD:1624291 RGD
G Col5a2 collagen, type V, alpha 2 GBrowse link ISO 9 44,374,113 44,525,086 RGD:1624291 RGD
G Col5a3 collagen, type V, alpha 3 GBrowse link TAS 8 19,789,061 19,834,241 RGD:70693 RGD
G Col5a3 collagen, type V, alpha 3 GBrowse link ISO 8 19,789,061 19,834,241 RGD:1624291 RGD
collagen type VI term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Dcn decorin GBrowse link IDA 7 35,004,234 35,045,191 RGD:728372 RGD
collagen type XI term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col11a1 collagen, type XI, alpha 1 GBrowse link ISO 2 209,996,467 210,193,379 RGD:1624291 RGD
G Col11a2 collagen, type XI, alpha 2 GBrowse link IDA 20 4,924,452 4,953,310 RGD:1342432 RGD
G Col11a2 collagen, type XI, alpha 2 GBrowse link IDA 20 4,924,452 4,953,310 RGD:1342433 RGD
collagen type XII term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col12a1 collagen, type XII, alpha 1 GBrowse link IDA 8 84,641,358 84,756,923 RGD:727275 RGD
collagen type XVIII term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col18a1 collagen, type XVIII, alpha 1 GBrowse link TAS 20 11,920,816 11,982,468 RGD:632362 RGD
fibrillar collagen term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Col27a1 collagen, type XXVII, alpha 1 GBrowse link ISO 5 80,198,078 80,316,354 RGD:1624291 RGD
G Col27a1 collagen, type XXVII, alpha 1 GBrowse link IEA 5 80,198,078 80,316,354 RGD:1600115 ENSEMBL
G Lum lumican GBrowse link ISO 7 35,083,480 35,090,284 RGD:1624291 RGD
G Lum lumican GBrowse link IEA 7 35,083,480 35,090,284 RGD:1600115 ENSEMBL
G Mmp13 matrix metallopeptidase 13 GBrowse link Colocalizes_with IDA 8 4,158,887 4,169,166 RGD:2296059 RGD
G Tnxb tenascin XB GBrowse link colocalizes_with ISO 20 4,133,875 4,178,049 RGD:1624291 RGD
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 76568
    extracellular matrix part 449
      collagen 117
        anchoring collagen + 8
        collagen type XV 0
        fibrillar collagen + 33
        sheet-forming collagen + 8
        transmembrane collagen + 0
Path 2
Term Annotations click to browse term
  cellular_component 76568
    extracellular region 3439
      extracellular region part 2517
        proteinaceous extracellular matrix 661
          collagen 117
            anchoring collagen + 8
            collagen type XV 0
            fibrillar collagen + 33
            sheet-forming collagen + 8
            transmembrane collagen + 0
paths to the root

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