collagen binding - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS

Term:	collagen binding	go back to main search page
Accession:	GO:0005518	browse the term
Definition:	Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).

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collagen binding
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi3bp	ABI family, member 3 (NESH) binding protein		ISO	11	44,853,302	45,072,354	RGD:1624291	RGD
G	Ache	acetylcholinesterase		ISO				RGD:1624291	RGD
G	Adam9	ADAM metallopeptidase domain 9		ISO	16	71,446,498	71,526,108	RGD:1624291	RGD
G	Antxr1	anthrax toxin receptor 1		IEA	4	121,297,955	121,483,876	RGD:1600115	ENSEMBL
G	Antxr1	anthrax toxin receptor 1		ISO	4	121,297,955	121,483,876	RGD:1624291	RGD
G	Ap1g1	adaptor-related protein complex 1, gamma 1 subunit		IPI	19	39,676,021	39,734,854	RGD:634622	RGD
G	Ccbe1	collagen and calcium binding EGF domains 1		ISO	18	62,407,265	62,442,194	RGD:1624291	RGD
G	Comp	cartilage oligomeric matrix protein		ISO				RGD:1624291	RGD
G	Cspg4	chondroitin sulfate proteoglycan 4		IPI	8	60,610,835	60,645,877		UniProtKB
G	Dcn	decorin		IDA	7	35,004,234	35,045,191	RGD:728372	RGD
G	Ddr1	discoidin domain receptor tyrosine kinase 1		ISO	20	3,194,265	3,214,611	RGD:1624291	RGD
G	Ddr1	discoidin domain receptor tyrosine kinase 1		ISO	20	3,194,265	3,214,611	RGD:1624291	RGD
G	Ddr1	discoidin domain receptor tyrosine kinase 1		ISO	20	3,194,265	3,214,611	RGD:1624291	RGD
G	Ddr1	discoidin domain receptor tyrosine kinase 1		ISS	20	3,194,265	3,214,611	RGD:1600115	UniProtKB
G	Ddr1	discoidin domain receptor tyrosine kinase 1		IEA	20	3,194,265	3,214,611	RGD:1600115	ENSEMBL
G	Ddr2	discoidin domain receptor tyrosine kinase 2		IDA	13	85,801,449	85,846,636	RGD:727757	RGD
G	Ddr2	discoidin domain receptor tyrosine kinase 2		ISO	13	85,801,449	85,846,636	RGD:1624291	RGD
G	Dpp4	dipeptidylpeptidase 4		IDA	3	44,279,255	44,360,283	RGD:1626468	RGD
G	Gp5	glycoprotein V (platelet)		ISO	11	72,341,773	72,344,865	RGD:1624291	RGD
G	Gp5	glycoprotein V (platelet)		IEA	11	72,341,773	72,344,865	RGD:1600115	ENSEMBL
G	Gp6	glycoprotein 6 (platelet)		ISO				RGD:1624291	RGD
G	Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12		ISO	3	78,436,634	78,559,707	RGD:1624291	RGD
G	Hsd17b12	hydroxysteroid (17-beta) dehydrogenase 12		IEA	3	78,436,634	78,559,707	RGD:1600115	ENSEMBL
G	Itga1	integrin, alpha 1		IMP	2	47,107,849	47,206,261	RGD:2302138	RGD
G	Itga2	integrin, alpha 2		TAS	2	46,967,681	47,080,909	RGD:1302878	RGD
G	Itga3	integrin, alpha 3		IDA	10	83,728,710	83,759,576	RGD:2325829	RGD
G	Itga9	integrin, alpha 9		IDA	8	123,526,904	123,838,241	RGD:2317878	RGD
G	Itgb1	integrin, beta 1		IDA	19	58,600,095	58,647,531	RGD:2325829	RGD
G	Lum	lumican		ISO	7	35,083,480	35,090,284	RGD:1624291	RGD
G	Lum	lumican		IEA	7	35,083,480	35,090,284	RGD:1600115	ENSEMBL
G	Map1a	microtubule-associated protein 1A		IPI	3	108,097,119	108,111,060	RGD:634622	RGD
G	Nid1	nidogen 1		ISO	17	66,857,529	66,930,273	RGD:1624291	RGD
G	Nid1	nidogen 1		IEA	17	66,857,529	66,930,273	RGD:1600115	ENSEMBL
G	Pak1	p21 protein (Cdc42/Rac)-activated kinase 1		ISO	1	155,057,622	155,174,714	RGD:1624291	RGD
G	Pak1	p21 protein (Cdc42/Rac)-activated kinase 1		ISS	1	155,057,622	155,174,714	RGD:1600115	UniProtKB
G	Pcolce	procollagen C-endopeptidase enhancer		ISO	12	19,672,505	19,678,821	RGD:1624291	RGD
G	Pcolce	procollagen C-endopeptidase enhancer		IEA	12	19,672,505	19,678,821	RGD:1600115	ENSEMBL
G	Pdgfa	platelet-derived growth factor alpha polypeptide		ISO	12	16,151,045	16,172,412	RGD:1624291	RGD
G	Pdgfa	platelet-derived growth factor alpha polypeptide		ISS	12	16,151,045	16,172,412	RGD:1600115	UniProtKB
G	Pdgfb	platelet-derived growth factor beta polypeptide		ISO	7	118,244,385	118,262,021	RGD:1624291	RGD
G	Pdgfb	platelet-derived growth factor beta polypeptide		IEA	7	118,244,385	118,262,021	RGD:1600115	ENSEMBL
G	Rell2	RELT-like 2		ISO	18	30,876,604	30,880,175	RGD:1624291	RGD
G	Rell2	RELT-like 2		IEA	18	30,876,604	30,880,175	RGD:1600115	ENSEMBL
G	RGD1562885	similar to RIKEN cDNA 2300002M23		ISO	20	3,340,321	3,341,178	RGD:1624291	RGD
G	Serpinh1	serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)		TAS	1	156,666,914	156,674,210	RGD:68754	RGD
G	Smad3	SMAD family member 3		ISO	8	67,803,909	67,952,056	RGD:1624291	RGD
G	Smad3	SMAD family member 3		IEA	8	67,803,909	67,952,056	RGD:1600115	ENSEMBL
G	Smad4	SMAD family member 4		ISO	18	70,432,705	70,461,541	RGD:1624291	RGD
G	Smad7	SMAD family member 7		ISO	18	72,294,803	72,323,354	RGD:1624291	RGD
G	Smad7	SMAD family member 7		IEA	18	72,294,803	72,323,354	RGD:1600115	ENSEMBL
G	Srgn	serglycin		IDA	20	29,746,729	29,761,072	RGD:2316806	RGD
G	Thbs4	thrombospondin 4		IDA	2	23,010,823	23,053,527	RGD:1580072	RGD
G	Tll1	tolloid-like 1		ISO	16	28,433,106	28,641,870	RGD:1624291	RGD
G	Tnxb	tenascin XB		ISO	20	4,133,875	4,178,049	RGD:1624291	RGD
G	Ush2a	Usher syndrome 2A (autosomal recessive, mild)		ISO	13	104,481,807	104,606,485	RGD:1624291	RGD
G	Ush2a	Usher syndrome 2A (autosomal recessive, mild)		ISO	13	104,481,807	104,606,485	RGD:1624291	RGD
G	Vwf	von Willebrand factor		ISO	4	161,723,415	161,854,766	RGD:1624291	RGD
G	Vwf	von Willebrand factor		IEA	4	161,723,415	161,854,766	RGD:1600115	ENSEMBL
collagen V binding
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Gpc1	glypican 1		IPI				RGD:5683638	RGD
G	Hspg2	heparan sulfate proteoglycan 2		IPI				RGD:5683638	RGD
G	RGD1562885	similar to RIKEN cDNA 2300002M23		ISO	20	3,340,321	3,341,178	RGD:1624291	RGD
G	RGD1562885	similar to RIKEN cDNA 2300002M23		IEA	20	3,340,321	3,341,178	RGD:1600115	ENSEMBL
G	Thbs1	thrombospondin 1		ISO				RGD:1624291	RGD

Term paths to the root

Path 1
Term	Annotations
molecular_function	87786
binding	56523
protein binding	39031
collagen binding	63
collagen V binding	5