ONTOLOGY REPORT - ANNOTATIONS

Term:somitogenesis
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Accession:GO:0001756 term browser browse the term
Definition:The formation of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo.
Synonyms:exact_synonym: formation of mesodermal clusters
 xref_analog: Wikipedia:Somitogenesis

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somitogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Abi1 abl-interactor 1 GBrowse link ISO 17 96,576,331 96,648,752 RGD:1624291 RGD
G Abi1 abl-interactor 1 GBrowse link IEA 17 96,576,331 96,648,752 RGD:1600115 ENSEMBL
G Atm ataxia telangiectasia mutated GBrowse link ISO 8 56,894,746 56,996,565 RGD:1624291 RGD
G Atm ataxia telangiectasia mutated GBrowse link IEA 8 56,894,746 56,996,565 RGD:1600115 ENSEMBL
G Axin2 axin 2 GBrowse link ISO 10 98,294,466 98,321,830 RGD:1624291 RGD
G Bmpr1a bone morphogenetic protein receptor, type IA GBrowse link ISO 16 10,061,943 10,105,854 RGD:1624291 RGD
G Bmpr1a bone morphogenetic protein receptor, type IA GBrowse link IEA 16 10,061,943 10,105,854 RGD:1600115 ENSEMBL
G Dll1 delta-like 1 (Drosophila) GBrowse link ISO 1 54,240,395 54,248,183 RGD:1624291 RGD
G Dll3 delta-like 3 (Drosophila) GBrowse link ISO 1 83,373,482 83,381,219 RGD:1624291 RGD
G Dll3 delta-like 3 (Drosophila) GBrowse link ISO 1 83,373,482 83,381,219 RGD:1624291 RGD
G Dll3 delta-like 3 (Drosophila) GBrowse link IEA 1 83,373,482 83,381,219 RGD:1600115 ENSEMBL
G Ep300 E1A binding protein p300 GBrowse link ISO 7 119,938,507 120,008,886 RGD:1624291 RGD
G Ep300 E1A binding protein p300 GBrowse link IEA 7 119,938,507 120,008,886 RGD:1600115 ENSEMBL
G Foxb1 forkhead box B1 GBrowse link ISS 8 74,200,271 74,202,891 RGD:1600115 UniProtKB
G Foxc1 forkhead box C1 GBrowse link ISO 17 39,026,186 39,030,163 RGD:1624291 RGD
G Foxc2 forkhead box C2 ISO RGD:1624291 RGD
G Foxc2 forkhead box C2 IBA RGD:1600115 RefGenome
G Foxs1 forkhead box S1 GBrowse link IBA 3 143,272,507 143,273,776 RGD:1600115 RefGenome
G Hes7 hairy and enhancer of split 7 (Drosophila) GBrowse link ISO 10 55,879,891 55,882,414 RGD:1624291 RGD
G Hes7 hairy and enhancer of split 7 (Drosophila) GBrowse link ISO 10 55,879,891 55,882,414 RGD:1624291 RGD
G Hes7 hairy and enhancer of split 7 (Drosophila) GBrowse link IEA 10 55,879,891 55,882,414 RGD:1600115 ENSEMBL
G Ifitm1 interferon induced transmembrane protein 1 GBrowse link ISO 1 201,154,494 201,155,509 RGD:1624291 RGD
G Kat2a K(lysine) acetyltransferase 2A GBrowse link ISO 10 89,642,002 89,649,953 RGD:1624291 RGD
G Kat2a K(lysine) acetyltransferase 2A GBrowse link ISO 10 89,642,002 89,649,953 RGD:1624291 RGD
G Kat2a K(lysine) acetyltransferase 2A GBrowse link IEA 10 89,642,002 89,649,953 RGD:1600115 ENSEMBL
G Lef1 lymphoid enhancer binding factor 1 GBrowse link ISO 2 228,550,263 228,673,131 RGD:1624291 RGD
G Lef1 lymphoid enhancer binding factor 1 GBrowse link ISO 2 228,550,263 228,673,131 RGD:1624291 RGD
G Lef1 lymphoid enhancer binding factor 1 GBrowse link IEA 2 228,550,263 228,673,131 RGD:1600115 ENSEMBL
G Lef1 lymphoid enhancer binding factor 1 GBrowse link IBA 2 228,550,263 228,673,131 RGD:1600115 RefGenome
G Lrp6 low density lipoprotein receptor-related protein 6 GBrowse link ISO 4 171,337,114 171,444,932 RGD:1624291 RGD
G Mesp2 mesoderm posterior 2 homolog (mouse) GBrowse link ISO 1 135,590,020 135,592,626 RGD:1624291 RGD
G Mesp2 mesoderm posterior 2 homolog (mouse) GBrowse link IEA 1 135,590,020 135,592,626 RGD:1600115 ENSEMBL
G Mib1 mindbomb E3 ubiquitin protein ligase 1 GBrowse link ISO 18 2,106,102 2,224,819 RGD:1624291 RGD
G Msgn1 mesogenin 1 GBrowse link ISO 6 34,642,722 34,643,362 RGD:1624291 RGD
G Msgn1 mesogenin 1 GBrowse link IEA 6 34,642,722 34,643,362 RGD:1600115 ENSEMBL
G Myf5 myogenic factor 5 GBrowse link ISO 7 46,189,256 46,192,487 RGD:1624291 RGD
G Myf5 myogenic factor 5 GBrowse link ISO 7 46,189,256 46,192,487 RGD:1624291 RGD
G Myf5 myogenic factor 5 GBrowse link ISO 7 46,189,256 46,192,487 RGD:1624291 RGD
G Myf5 myogenic factor 5 GBrowse link IEA 7 46,189,256 46,192,487 RGD:1600115 ENSEMBL
G Myf6 myogenic factor 6 GBrowse link ISO 7 46,199,972 46,201,867 RGD:1624291 RGD
G Myf6 myogenic factor 6 GBrowse link IEA 7 46,199,972 46,201,867 RGD:1600115 ENSEMBL
G Nckap1 NCK-associated protein 1 GBrowse link ISO 3 63,191,700 63,274,021 RGD:1624291 RGD
G Nkx3-1 NK3 homeobox 1 GBrowse link IEA 15 49,743,313 49,745,905 RGD:1600115 ENSEMBL
G Palb2 partner and localizer of BRCA2 GBrowse link ISO 1 180,928,710 180,952,518 RGD:1624291 RGD
G Pax1 paired box 1 GBrowse link ISO 3 136,006,504 136,018,849 RGD:1624291 RGD
G Pax1 paired box 1 GBrowse link IEA 3 136,006,504 136,018,849 RGD:1600115 ENSEMBL
G Pcdh8 protocadherin 8 GBrowse link ISO 15 61,056,994 61,060,741 RGD:1624291 RGD
G Pcdh8 protocadherin 8 GBrowse link IEA 15 61,056,994 61,060,741 RGD:1600115 ENSEMBL
G Plxna2 plexin A2 GBrowse link IEA 13 110,555,958 110,754,672 RGD:1600115 ENSEMBL
G Pofut1 protein O-fucosyltransferase 1 GBrowse link ISO 3 143,592,269 143,614,466 RGD:1624291 RGD
G Pofut1 protein O-fucosyltransferase 1 GBrowse link IEA 3 143,592,269 143,614,466 RGD:1600115 ENSEMBL
G Prkdc protein kinase, DNA activated, catalytic polypeptide GBrowse link ISO 11 86,951,420 87,169,229 RGD:1624291 RGD
G Psen1 presenilin 1 GBrowse link ISO 6 107,737,543 107,776,357 RGD:1624291 RGD
G Psen1 presenilin 1 GBrowse link ISO 6 107,737,543 107,776,357 RGD:1624291 RGD
G Psen1 presenilin 1 GBrowse link IEA 6 107,737,543 107,776,357 RGD:1600115 ENSEMBL
G Psen2 presenilin 2 GBrowse link ISO 13 95,934,674 95,951,836 RGD:1624291 RGD
G Psen2 presenilin 2 GBrowse link IEA 13 95,934,674 95,951,836 RGD:1600115 ENSEMBL
G Ripply2 ripply2 homolog (zebrafish) GBrowse link ISO 8 92,272,079 92,276,182 RGD:1624291 RGD
G Ripply2 ripply2 homolog (zebrafish) GBrowse link ISO 8 92,272,079 92,276,182 RGD:1624291 RGD
G Ror2 receptor tyrosine kinase-like orphan receptor 2 GBrowse link ISO 17 17,735,999 17,917,032 RGD:1624291 RGD
G Ror2 receptor tyrosine kinase-like orphan receptor 2 GBrowse link IEA 17 17,735,999 17,917,032 RGD:1600115 ENSEMBL
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C GBrowse link IEA 4 13,739,659 13,914,636 RGD:1600115 ENSEMBL
G Sfrp1 secreted frizzled-related protein 1 GBrowse link ISO 16 73,030,458 73,067,304 RGD:1624291 RGD
G Sfrp2 secreted frizzled-related protein 2 GBrowse link ISO 2 175,479,320 175,486,865 RGD:1624291 RGD
G Smad3 SMAD family member 3 GBrowse link ISO 8 67,803,909 67,952,056 RGD:1624291 RGD
G Smad3 SMAD family member 3 GBrowse link IEA 8 67,803,909 67,952,056 RGD:1600115 ENSEMBL
G T brachyury GBrowse link ISO 1 46,937,223 46,944,988 RGD:1624291 RGD
G T brachyury GBrowse link ISO 1 46,937,223 46,944,988 RGD:1624291 RGD
G T brachyury GBrowse link ISO 1 46,937,223 46,944,988 RGD:1624291 RGD
G T brachyury GBrowse link IEA 1 46,937,223 46,944,988 RGD:1600115 ENSEMBL
G Tbx18 T-box18 GBrowse link ISO 8 92,984,336 93,012,343 RGD:1624291 RGD
G Tbx18 T-box18 GBrowse link IEA 8 92,984,336 93,012,343 RGD:1600115 ENSEMBL
G Tcf15 transcription factor 15 GBrowse link ISO 3 142,491,664 142,497,446 RGD:1624291 RGD
G Tcf15 transcription factor 15 GBrowse link IEA 3 142,491,664 142,497,446 RGD:1600115 ENSEMBL
G Tmed2 transmembrane emp24 domain trafficking protein 2 GBrowse link ISO 12 33,165,291 33,174,326 RGD:1624291 RGD
G Tp53 tumor protein p53 GBrowse link ISO 10 56,399,721 56,411,150 RGD:1624291 RGD
G Wnt3a wingless-type MMTV integration site family, member 3A GBrowse link ISO 10 45,553,682 45,594,983 RGD:1624291 RGD
G Wnt3a wingless-type MMTV integration site family, member 3A GBrowse link ISO 10 45,553,682 45,594,983 RGD:1624291 RGD
G Wnt3a wingless-type MMTV integration site family, member 3A GBrowse link ISO 10 45,553,682 45,594,983 RGD:1624291 RGD
G Wnt5a wingless-type MMTV integration site family, member 5A GBrowse link ISO 16 3,782,025 3,799,625 RGD:1624291 RGD
G Wnt5a wingless-type MMTV integration site family, member 5A GBrowse link IEA 16 3,782,025 3,799,625 RGD:1600115 ENSEMBL
G Zeb2 zinc finger E-box binding homeobox 2 GBrowse link ISO 3 25,513,009 25,654,964 RGD:1624291 RGD
G Zeb2 zinc finger E-box binding homeobox 2 GBrowse link ISO 3 25,513,009 25,654,964 RGD:1624291 RGD
G Zeb2 zinc finger E-box binding homeobox 2 GBrowse link IEA 3 25,513,009 25,654,964 RGD:1600115 ENSEMBL
axis elongation involved in somitogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Lrp6 low density lipoprotein receptor-related protein 6 GBrowse link ISO 4 171,337,114 171,444,932 RGD:1624291 RGD
G Lrp6 low density lipoprotein receptor-related protein 6 GBrowse link IBA 4 171,337,114 171,444,932 RGD:1600115 RefGenome
G Med12 mediator complex subunit 12 GBrowse link ISO X 89,351,546 89,374,489 RGD:1624291 RGD
G Med12 mediator complex subunit 12 GBrowse link IEA X 89,351,546 89,374,489 RGD:1600115 ENSEMBL
G Wnt3a wingless-type MMTV integration site family, member 3A GBrowse link ISO 10 45,553,682 45,594,983 RGD:1624291 RGD
convergent extension involved in somitogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Sfrp1 secreted frizzled-related protein 1 GBrowse link ISO 16 73,030,458 73,067,304 RGD:1624291 RGD
G Sfrp1 secreted frizzled-related protein 1 GBrowse link IEA 16 73,030,458 73,067,304 RGD:1600115 ENSEMBL
regulation of cell motility involved in somitogenic axis elongation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha GBrowse link IEA 8 106,061,334 106,155,090 RGD:1600115 ENSEMBL
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha GBrowse link ISO 8 106,061,334 106,155,090 RGD:1624291 RGD
regulation of somitogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Dmrt2 doublesex and mab-3 related transcription factor 2 GBrowse link ISO 1 229,114,066 229,120,555 RGD:1624291 RGD
G Notch1 notch 1 GBrowse link ISO 3 4,631,797 4,677,640 RGD:1624291 RGD
G Notch1 notch 1 GBrowse link IEA 3 4,631,797 4,677,640 RGD:1600115 ENSEMBL
G Pax3 paired box 3 GBrowse link ISO 9 77,477,813 77,576,632 RGD:1624291 RGD
somite rostral/caudal axis specification term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Epb4.1l5 erythrocyte protein band 4.1-like 5 GBrowse link IEA 13 32,373,377 32,426,745 RGD:1600115 ENSEMBL
G Foxa2 forkhead box A2 GBrowse link ISO 3 136,739,009 136,743,204 RGD:1624291 RGD
G Foxa2 forkhead box A2 GBrowse link IEA 3 136,739,009 136,743,204 RGD:1600115 ENSEMBL
G Gdf3 growth differentiation factor 3 GBrowse link ISO 4 159,064,054 159,067,854 RGD:1624291 RGD
G Gdf3 growth differentiation factor 3 GBrowse link IEA 4 159,064,054 159,067,854 RGD:1600115 ENSEMBL
G Kdm6a lysine (K)-specific demethylase 6A GBrowse link ISO X 15,926,055 16,052,872 RGD:1624291 RGD
G Lhx1 LIM homeobox 1 GBrowse link ISO 10 72,800,497 72,805,799 RGD:1624291 RGD
G Lhx1 LIM homeobox 1 GBrowse link IEA 10 72,800,497 72,805,799 RGD:1600115 ENSEMBL
G Otx2 orthodenticle homeobox 2 GBrowse link ISO 15 24,622,851 24,632,435 RGD:1624291 RGD
G Otx2 orthodenticle homeobox 2 GBrowse link IEA 15 24,622,851 24,632,435 RGD:1600115 ENSEMBL
G Ripply2 ripply2 homolog (zebrafish) GBrowse link ISO 8 92,272,079 92,276,182 RGD:1624291 RGD
G Ripply2 ripply2 homolog (zebrafish) GBrowse link IEA 8 92,272,079 92,276,182 RGD:1600115 ENSEMBL
G Smad4 SMAD family member 4 GBrowse link ISO 18 70,432,705 70,461,541 RGD:1624291 RGD
G Tmed2 transmembrane emp24 domain trafficking protein 2 GBrowse link ISO 12 33,165,291 33,174,326 RGD:1624291 RGD
G Tmed2 transmembrane emp24 domain trafficking protein 2 GBrowse link IEA 12 33,165,291 33,174,326 RGD:1600115 ENSEMBL
somite specification term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Cobl cordon-bleu WH2 repeat protein GBrowse link IEA 14 93,154,637 93,309,406 RGD:1600115 ENSEMBL
G Dll1 delta-like 1 (Drosophila) GBrowse link ISO 1 54,240,395 54,248,183 RGD:1624291 RGD
G Dll1 delta-like 1 (Drosophila) GBrowse link IEA 1 54,240,395 54,248,183 RGD:1600115 ENSEMBL
G Meox1 mesenchyme homeobox 1 GBrowse link ISO 10 90,921,589 90,942,298 RGD:1624291 RGD
G Meox1 mesenchyme homeobox 1 GBrowse link IEA 10 90,921,589 90,942,298 RGD:1600115 ENSEMBL
G Meox2 mesenchyme homeobox 2 GBrowse link ISO 6 55,895,760 55,957,066 RGD:1624291 RGD
G Meox2 mesenchyme homeobox 2 GBrowse link IEA 6 55,895,760 55,957,066 RGD:1600115 ENSEMBL
Wnt receptor signaling pathway involved in somitogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Axin1 axin 1 GBrowse link IBA 10 15,409,373 15,462,726 RGD:1600115 RefGenome
G Axin2 axin 2 GBrowse link IBA 10 98,294,466 98,321,830 RGD:1600115 RefGenome
G Dkk1 dickkopf 1 homolog (Xenopus laevis) GBrowse link ISO 1 234,392,743 234,396,426 RGD:1624291 RGD
G Lrp6 low density lipoprotein receptor-related protein 6 GBrowse link ISO 4 171,337,114 171,444,932 RGD:1624291 RGD
G Lrp6 low density lipoprotein receptor-related protein 6 GBrowse link IBA 4 171,337,114 171,444,932 RGD:1600115 RefGenome
G Sfrp1 secreted frizzled-related protein 1 GBrowse link ISO 16 73,030,458 73,067,304 RGD:1624291 RGD
G Sfrp1 secreted frizzled-related protein 1 GBrowse link IEA 16 73,030,458 73,067,304 RGD:1600115 ENSEMBL
G Sfrp2 secreted frizzled-related protein 2 GBrowse link ISO 2 175,479,320 175,486,865 RGD:1624291 RGD
G Sfrp2 secreted frizzled-related protein 2 GBrowse link IEA 2 175,479,320 175,486,865 RGD:1600115 ENSEMBL
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 135967
    developmental process 29431
      single-organism developmental process 22738
        somitogenesis 128
          Wnt receptor signaling pathway involved in somitogenesis 9
          axis elongation involved in somitogenesis + 9
          fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
          regulation of somitogenesis + 6
          regulation of transcription from RNA polymerase II promoter involved in somitogenesis 0
          retinoic acid receptor signaling pathway involved in somitogenesis 0
          somite rostral/caudal axis specification 15
          somite specification 7
Path 2
Term Annotations click to browse term
  biological_process 135967
    multicellular organismal process 37265
      single-multicellular organism process 36068
        multicellular organismal development 24588
          pattern specification process 1458
            regionalization 977
              anterior/posterior pattern specification 506
                somitogenesis 128
                  Wnt receptor signaling pathway involved in somitogenesis 9
                  axis elongation involved in somitogenesis + 9
                  fibroblast growth factor receptor signaling pathway involved in somitogenesis 0
                  regulation of somitogenesis + 6
                  regulation of transcription from RNA polymerase II promoter involved in somitogenesis 0
                  retinoic acid receptor signaling pathway involved in somitogenesis 0
                  somite rostral/caudal axis specification 15
                  somite specification 7
paths to the root

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