Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio
go back to main search page
Accession:CMO:0001980 term browser browse the term
Definition:A calculated measurement in which the value representing the area of the spinal cord vental horn that demonstrates histological staining for the MHC Class II RT1A molecule is divided by value representing the total area of the spinal cord ventral horn, and presented as a ratio, fraction, quotient or percentage. MHC Class II RT1A is a class II major histocompatibility complex protein that is involved in antigen presentation and has been implicated in allograft rejection and autoimmunity.
Synonyms:exact_synonym: area of spinal cord ventral horn stained for MHC Class II RT1A to total area of spinal cord ventral horn ratio


show annotations for term's descendants           Sort by:
MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf2 Neuroinflammation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:6,154,377...6,357,896 JBrowse link
Q Neuinf3 Neuroinflammation QTL 3 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:3,406,320...5,387,112 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    tissue composition measurement 26
      tissue molecular composition measurement 26
        spinal cord molecular composition measurement 11
          spinal cord protein/peptide composition measurement 6
            spinal cord MHC class II protein measurement 5
              MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio 2
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    nervous system measurement 63
      central nervous system measurement 29
        spinal cord measurement 11
          spinal cord morphological measurement 11
            spinal cord ventral horn morphological measurement 2
              spinal cord ventral horn area 2
                calculated spinal cord ventral horn area measurement 2
                  MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio 2
paths to the root