ONTOLOGY REPORT - ANNOTATIONS

Term:2-trans,6-trans-farnesyl diphosphate
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Accession:CHEBI:17407 term browser browse the term
Definition:The trans,trans-stereoisomer of farnesyl diphosphate.
Synonyms:exact_synonym: (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate
 related_synonym: (2E,6E)-farnesol diphosphate;   (2E,6E)-farnesyl diphosphate;   (2E,6E)-farnesyl pyrophosphate;   (E,E)-farnesyl pyrophosphate;   (all-E)-farnesyl diphosphate;   2-trans,6-trans-farnesyl pyrophosphate;   C15H28O7P2;   CC(C)=CCC\\C(C)=C\\CC\\C(C)=C\\COP(O)(=O)OP(O)(O)=O;   FARNESYL DIPHOSPHATE;   Farnesyl diphosphate;   Farnesyl pyrophosphate;   InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)/b14-9+,15-11+;   InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-N;   all-trans-farnesyl pyrophosphate;   trans,trans-Farnesyl diphosphate;   trans,trans-farnesyl diphosphate
 alt_id: CHEBI:10700;   CHEBI:11488;   CHEBI:11491;   CHEBI:12854;   CHEBI:12874;   CHEBI:19789;   CHEBI:42496
 xref_casrn: 13058-04-3;   372-97-4
 xref: Beilstein:2482197 "Beilstein Registry Number";   ChEMBL:206156 "ChEMBL COMPOUND";   ChemIDplus:372-97-4 "CAS Registry Number";   CiteXplore:7753173 "PubMed citation";   KEGG COMPOUND:13058-04-3 "CAS Registry Number";   KEGG COMPOUND:C00448 "KEGG COMPOUND";   LIPID MAPS:LMPR0103010002 "LIPID MAPS instance"
 xref_mesh: MESH:C004808
 xref: PDBeChem:FPP "PDBeChem"
 cyclic_relationship: is_conjugate_acid_of CHEBI:175763

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2-trans,6-trans-farnesyl diphosphate term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Birc5 baculoviral IAP repeat-containing 5 multiple interactions ISO RGD:6480464 CTD
G Bmp2 bone morphogenetic protein 2 GBrowse link multiple interactions ISO 3 121,372,692 121,381,236 RGD:6480464 CTD
G Casp3 caspase 3 GBrowse link multiple interactions ISO 16 48,944,226 48,962,420 RGD:6480464 CTD
G Casp3 caspase 3 GBrowse link multiple interactions EXP 16 48,944,226 48,962,420 RGD:6480464 CTD
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 GBrowse link multiple interactions EXP 1 251,965,458 251,971,449 RGD:6480464 CTD
G Fnta farnesyltransferase, CAAX box, alpha GBrowse link multiple interactions EXP 16 70,440,340 70,458,433 RGD:6480464 CTD
G Fntb farnesyltransferase, CAAX box, beta GBrowse link multiple interactions EXP 6 99,427,967 99,511,373 RGD:6480464 CTD
G Fos FBJ osteosarcoma oncogene GBrowse link multiple interactions ISO 6 109,559,135 109,562,001 RGD:6480464 CTD
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase GBrowse link multiple interactions ISO 2 27,127,504 27,149,580 RGD:6480464 CTD
G Hras Harvey rat sarcoma virus oncogene GBrowse link multiple interactions ISO 1 201,385,705 201,388,987 RGD:6480464 CTD
G Icam1 intercellular adhesion molecule 1 GBrowse link multiple interactions ISO 8 20,040,177 20,051,939 RGD:6480464 CTD
G Il12b interleukin 12B GBrowse link multiple interactions ISO 10 29,558,955 29,568,331 RGD:6480464 CTD
G Il1b interleukin 1 beta GBrowse link multiple interactions ISO 3 116,964,422 116,970,867 RGD:6480464 CTD
G Kras v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog GBrowse link multiple interactions EXP 4 182,869,242 182,895,106 RGD:6480464 CTD
G Mapk1 mitogen activated protein kinase 1 GBrowse link multiple interactions ISO 11 85,968,732 86,030,387 RGD:6480464 CTD
G Mapk3 mitogen activated protein kinase 3 GBrowse link multiple interactions ISO 1 185,935,044 185,941,245 RGD:6480464 CTD
G Mapk8 mitogen-activated protein kinase 8 GBrowse link multiple interactions ISO 16 8,925,133 9,004,897 RGD:6480464 CTD
G Mmp9 matrix metallopeptidase 9 GBrowse link multiple interactions EXP 3 155,985,473 155,993,433 RGD:6480464 CTD
G Pon1 paraoxonase 1 GBrowse link multiple interactions ISO 4 29,936,314 29,964,821 RGD:6480464 CTD
G Pon1 paraoxonase 1 GBrowse link multiple interactions ISO 4 29,936,314 29,964,821 RGD:6480464 CTD
G Rac1 ras-related C3 botulinum toxin substrate 1 GBrowse link multiple interactions ISO 12 11,380,314 11,400,531 RGD:6480464 CTD
G Rhoa ras homolog family member A multiple interactions ISO RGD:6480464 CTD
G Rhoa ras homolog family member A multiple interactions ISO RGD:6480464 CTD
G Runx2 runt-related transcription factor 2 GBrowse link multiple interactions ISO 9 11,869,234 12,025,219 RGD:6480464 CTD
G Sele selectin E GBrowse link multiple interactions ISO 13 79,813,455 79,822,845 RGD:6480464 CTD
G Tnf tumor necrosis factor GBrowse link multiple interactions ISO 20 3,661,000 3,663,618 RGD:6480464 CTD
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 492574
    chemical entity 492574
      atom 491537
        nonmetal atom 450591
          carbon atom 407233
            organic molecular entity 407226
              isoprenoid 15675
                prenols 190
                  polyprenol 122
                    polyprenol phosphate 122
                      farnesyl phosphate 52
                        farnesyl diphosphate 52
                          2-trans,6-trans-farnesyl diphosphate 26
Path 2
Term Annotations click to browse term
  CHEBI ontology 492574
    subatomic particle 491537
      composite particle 491537
        hadron 491537
          baryon 491537
            nucleon 491537
              atomic nucleus 491537
                atom 491537
                  main group element atom 461203
                    p-block element atom 458699
                      chalcogen 315660
                        oxygen atom 300604
                          oxygen molecular entity 300604
                            hydroxides 224546
                              oxoacid 143579
                                pnictogen oxoacid 8333
                                  phosphorus oxoacid 7542
                                    phosphoric acids 7407
                                      phosphoric acid 7407
                                        phosphoric acid derivative 6386
                                          phosphate 6380
                                            organic phosphate 6379
                                              phospholipid 182
                                                isoprenoid phosphate 135
                                                  prenol phosphate 135
                                                    polyprenol phosphate 122
                                                      farnesyl phosphate 52
                                                        farnesyl diphosphate 52
                                                          2-trans,6-trans-farnesyl diphosphate 26
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