ONTOLOGY REPORT - ANNOTATIONS

Term:lycopene
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Accession:CHEBI:15948 term browser browse the term
Definition:An acyclic carotene that has formula C40H56.
Synonyms:exact_synonym: psi,psi-carotene
 related_synonym: (6E,8E,10E,12E,14E,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene;   C40H56;   CC(C)=CCC\\C(C)=C\\C=C\\C(C)=C\\C=C\\C(C)=C\\C=C\\C=C(C)\\C=C\\C=C(C)\\C=C\\C=C(/C)CCC=C(C)C;   InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+;   InChIKey=OAIJSZIZWZSQBC-GYZMGTAESA-N;   all-trans-lycopene
 alt_id: CHEBI:14541;   CHEBI:26367;   CHEBI:43789;   CHEBI:6596
 xref_casrn: 502-65-8
 xref: Beilstein:1730097 "Beilstein Registry Number";   COMe:MOL000048 "COMe";   ChEMBL:602735 "ChEMBL COMPOUND";   ChemIDplus:502-65-8 "CAS Registry Number";   KEGG COMPOUND:502-65-8 "CAS Registry Number";   KEGG COMPOUND:C05432 "KEGG COMPOUND";   LIPID MAPS:LMPR01070257 "LIPID MAPS instance"
 xref_mesh: MESH:C015329
 xref: PDBeChem:LYC "PDBeChem"

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lycopene term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Ache acetylcholinesterase multiple interactions EXP RGD:6480464 CTD
G Add1 adducin 1 (alpha) GBrowse link decreases expression ISO 14 81,750,430 81,808,919 RGD:6480464 CTD
G Ager advanced glycosylation end product-specific receptor GBrowse link multiple interactions ISO 20 4,250,613 4,253,540 RGD:6480464 CTD
G Ahr aryl hydrocarbon receptor GBrowse link decreases expression ISO 6 54,205,104 54,240,268 RGD:6480464 CTD
G Akt1 v-akt murine thymoma viral oncogene homolog 1 GBrowse link decreases phosphorylation ISO 6 137,640,482 137,657,552 RGD:6480464 CTD
G Andpro androgen regulated protein GBrowse link decreases expression EXP 3 138,085,660 138,092,024 RGD:6480464 CTD
G Ar androgen receptor GBrowse link decreases expression ISO X 85,949,507 86,119,199 RGD:6480464 CTD
G Bach1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 GBrowse link increases expression ISO 11 27,467,207 27,500,173 RGD:6480464 CTD
G Bap1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) GBrowse link increases expression ISO 16 6,684,470 6,693,296 RGD:6480464 CTD
G Bcl2 B-cell CLL/lymphoma 2 GBrowse link multiple interactions EXP 13 12,730,736 12,905,108 RGD:6480464 CTD
G Bcmo1 beta-carotene 15,15'-monooxygenase 1 GBrowse link multiple interactions ISO 19 47,202,955 47,239,225 RGD:6480464 CTD
G Braf v-raf murine sarcoma viral oncogene homolog B1 GBrowse link decreases expression ISO 4 67,117,759 67,243,058 RGD:6480464 CTD
G C1qa complement component 1, q subcomponent, A chain GBrowse link decreases expression ISO 5 155,662,333 155,665,180 RGD:6480464 CTD
G C4b complement component 4B (Chido blood group) GBrowse link decreases expression ISO 20 4,300,687 4,315,882 RGD:6480464 CTD
G Casp3 caspase 3 GBrowse link multiple interactions EXP 16 48,944,226 48,962,420 RGD:6480464 CTD
G Casp8 caspase 8 GBrowse link multiple interactions EXP 9 57,389,353 57,437,803 RGD:6480464 CTD
G Casp8 caspase 8 GBrowse link decreases expression ISO 9 57,389,353 57,437,803 RGD:6480464 CTD
G Cat catalase GBrowse link multiple interactions EXP 3 88,654,077 88,686,212 RGD:6480464 CTD
G Cat catalase GBrowse link increases expression ISO 3 88,654,077 88,686,212 RGD:6480464 CTD
G Cat catalase GBrowse link multiple interactions EXP 3 88,654,077 88,686,212 RGD:6480464 CTD
G Cat catalase GBrowse link increases activity EXP 3 88,654,077 88,686,212 RGD:6480464 CTD
G Ccnd1 cyclin D1 GBrowse link multiple interactions ISO 1 205,357,235 205,366,757 RGD:6480464 CTD
G Ccnd1 cyclin D1 GBrowse link multiple interactions ISO 1 205,357,235 205,366,757 RGD:6480464 CTD
G Ccnd1 cyclin D1 GBrowse link multiple interactions EXP 1 205,357,235 205,366,757 RGD:6480464 CTD
G Ccnd1 cyclin D1 GBrowse link decreases expression ISO 1 205,357,235 205,366,757 RGD:6480464 CTD
G Ccne1 cyclin E1 GBrowse link decreases expression ISO 1 90,568,189 90,577,426 RGD:6480464 CTD
G Ccne1 cyclin E1 GBrowse link increases expression ISO 1 90,568,189 90,577,426 RGD:6480464 CTD
G Cdk1 cyclin-dependent kinase 1 GBrowse link decreases expression ISO 20 20,018,044 20,044,030 RGD:6480464 CTD
G Cdk4 cyclin-dependent kinase 4 decreases expression ISO RGD:6480464 CTD
G Cdk5 cyclin-dependent kinase 5 GBrowse link decreases expression ISO 4 6,119,704 6,124,186 RGD:6480464 CTD
G Cdk7 cyclin-dependent kinase 7 GBrowse link decreases expression ISO 2 31,500,629 31,525,590 RGD:6480464 CTD
G Cdk9 cyclin-dependent kinase 9 GBrowse link decreases expression ISO 3 11,672,861 11,677,709 RGD:6480464 CTD
G Cdkn1a cyclin-dependent kinase inhibitor 1A GBrowse link multiple interactions ISO 20 7,376,325 7,386,778 RGD:6480464 CTD
G Chga chromogranin A (parathyroid secretory protein 1) increases expression ISO RGD:6480464 CTD
G Chgb chromogranin B (secretogranin 1) GBrowse link decreases expression ISO 3 120,571,736 120,584,874 RGD:6480464 CTD
G Crb1 crumbs homolog 1 (Drosophila) GBrowse link decreases expression ISO 13 52,558,317 52,725,099 RGD:6480464 CTD
G Ctss cathepsin S GBrowse link decreases expression ISO 2 190,425,290 190,466,877 RGD:6480464 CTD
G Cxcl14 chemokine (C-X-C motif) ligand 14 GBrowse link decreases expression ISO 17 14,286,747 14,295,502 RGD:6480464 CTD
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 GBrowse link multiple interactions EXP 8 61,793,976 61,805,308 RGD:6480464 CTD
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 GBrowse link decreases activity ISO 8 61,462,207 61,468,237 RGD:6480464 CTD
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 GBrowse link decreases activity ISO 6 2,548,224 2,553,767 RGD:6480464 CTD
G Cyp21a1 cytochrome P450, family 21, subfamily a, polypeptide 1 GBrowse link decreases expression EXP 20 4,125,357 4,128,518 RGD:6480464 CTD
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 GBrowse link increases activity ISO 12 9,517,016 9,541,000 RGD:6480464 CTD
G Ddb2 damage specific DNA binding protein 2 GBrowse link increases expression ISO 3 75,568,487 75,591,428 RGD:6480464 CTD
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 GBrowse link increases expression ISO 11 82,451,555 82,471,735 RGD:6480464 CTD
G Esr1 estrogen receptor 1 GBrowse link multiple interactions ISO 1 35,523,680 35,759,891 RGD:6480464 CTD
G Esr1 estrogen receptor 1 GBrowse link increases expression ISO 1 35,523,680 35,759,891 RGD:6480464 CTD
G Esr2 estrogen receptor 2 (ER beta) GBrowse link multiple interactions ISO 6 98,691,167 98,775,299 RGD:6480464 CTD
G Fancc Fanconi anemia, complementation group C GBrowse link decreases expression ISO 17 7,254,528 7,341,500 RGD:6480464 CTD
G Fancf Fanconi anemia, complementation group F GBrowse link decreases expression ISO 1 101,664,895 101,666,720 RGD:6480464 CTD
G Faslg Fas ligand (TNF superfamily, member 6) GBrowse link decreases expression ISO 13 77,472,950 77,480,210 RGD:6480464 CTD
G Fos FBJ osteosarcoma oncogene GBrowse link increases expression ISO 6 109,559,135 109,562,001 RGD:6480464 CTD
G Gfap glial fibrillary acidic protein GBrowse link decreases expression ISO 10 92,059,881 92,068,555 RGD:6480464 CTD
G Gja1 gap junction protein, alpha 1 GBrowse link increases expression ISO 20 35,409,815 35,422,262 RGD:6480464 CTD
G Gja4 gap junction protein, alpha 4 GBrowse link decreases expression ISO 5 146,755,061 146,757,594 RGD:6480464 CTD
G Gja5 gap junction protein, alpha 5 GBrowse link decreases expression ISO 2 191,824,118 191,843,867 RGD:6480464 CTD
G Gja5 gap junction protein, alpha 5 GBrowse link increases expression ISO 2 191,824,118 191,843,867 RGD:6480464 CTD
G Gpx4 glutathione peroxidase 4 GBrowse link decreases expression ISO 7 11,162,521 11,165,318 RGD:6480464 CTD
G Hmgb1 high mobility group box 1 multiple interactions ISO RGD:6480464 CTD
G Hmgb1 high mobility group box 1 decreases response to substance ISO RGD:6480464 CTD
G Hmox1 heme oxygenase (decycling) 1 GBrowse link increases expression EXP 19 13,963,139 13,969,960 RGD:6480464 CTD
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 GBrowse link multiple interactions EXP 2 193,337,342 193,346,799 RGD:6480464 CTD
G Icam1 intercellular adhesion molecule 1 GBrowse link multiple interactions ISO 8 20,040,177 20,051,939 RGD:6480464 CTD
G Igf1 insulin-like growth factor 1 GBrowse link multiple interactions ISO 7 24,531,669 24,605,742 RGD:6480464 CTD
G Igf1 insulin-like growth factor 1 GBrowse link decreases expression ISO 7 24,531,669 24,605,742 RGD:6480464 CTD
G Igf1 insulin-like growth factor 1 GBrowse link increases expression ISO 7 24,531,669 24,605,742 RGD:6480464 CTD
G Igf1 insulin-like growth factor 1 GBrowse link decreases expression EXP 7 24,531,669 24,605,742 RGD:6480464 CTD
G Igf1r insulin-like growth factor 1 receptor GBrowse link decreases expression ISO 1 122,704,976 122,990,007 RGD:6480464 CTD
G Igfbp2 insulin-like growth factor binding protein 2 GBrowse link increases expression ISO 9 71,966,877 71,994,211 RGD:6480464 CTD
G Il6 interleukin 6 GBrowse link decreases expression EXP 4 456,799 461,376 RGD:6480464 CTD
G Ivl involucrin GBrowse link decreases expression ISO 2 185,556,271 185,558,310 RGD:6480464 CTD
G Jak1 Janus kinase 1 GBrowse link increases expression ISO 5 121,804,586 121,905,581 RGD:6480464 CTD
G Jun jun proto-oncogene GBrowse link decreases expression ISO 5 115,358,166 115,361,259 RGD:6480464 CTD
G Kif2a kinesin heavy chain member 2A GBrowse link increases expression ISO 2 38,079,564 38,143,398 RGD:6480464 CTD
G Kpna2 karyopherin alpha 2 GBrowse link increases expression ISO 10 96,342,214 96,352,613 RGD:6480464 CTD
G Ldlr low density lipoprotein receptor GBrowse link increases expression ISO 8 20,824,040 20,846,920 RGD:6480464 CTD
G Lipa lipase A, lysosomal acid, cholesterol esterase GBrowse link increases expression ISO 1 238,466,493 238,500,195 RGD:6480464 CTD
G LOC100359600 karyopherin alpha 2-like GBrowse link increases expression ISO 6 10,523,393 10,524,982 RGD:6480464 CTD
G Map2k1 mitogen activated protein kinase kinase 1 GBrowse link increases expression ISO 8 68,379,074 68,451,554 RGD:6480464 CTD
G Map2k2 mitogen activated protein kinase kinase 2 GBrowse link decreases expression ISO 7 10,074,654 10,094,003 RGD:6480464 CTD
G Map2k4 mitogen activated protein kinase kinase 4 GBrowse link decreases expression ISO 10 52,009,149 52,041,599 RGD:6480464 CTD
G Map2k6 mitogen-activated protein kinase kinase 6 GBrowse link decreases expression ISO 10 99,859,684 99,974,446 RGD:6480464 CTD
G Mapk1 mitogen activated protein kinase 1 GBrowse link multiple interactions EXP 11 85,968,732 86,030,387 RGD:6480464 CTD
G Mapk14 mitogen activated protein kinase 14 GBrowse link decreases expression ISO 20 6,939,249 7,000,378 RGD:6480464 CTD
G Mapk14 mitogen activated protein kinase 14 GBrowse link increases expression ISO 20 6,939,249 7,000,378 RGD:6480464 CTD
G Mapk3 mitogen activated protein kinase 3 GBrowse link decreases expression ISO 1 185,935,044 185,941,245 RGD:6480464 CTD
G Mapk8 mitogen-activated protein kinase 8 GBrowse link decreases expression ISO 16 8,925,133 9,004,897 RGD:6480464 CTD
G Mgat2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase GBrowse link increases expression ISO 6 91,137,262 91,139,751 RGD:6480464 CTD
G Mlh1 mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) GBrowse link increases expression ISO 8 115,616,396 115,653,471 RGD:6480464 CTD
G Msh2 mutS homolog 2 (E. coli) GBrowse link increases expression ISO 6 11,199,906 11,258,350 RGD:6480464 CTD
G Msh6 mutS homolog 6 (E. coli) GBrowse link increases expression ISO 6 11,525,292 11,542,592 RGD:6480464 CTD
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 GBrowse link increases expression EXP 3 58,366,693 58,394,116 RGD:6480464 CTD
G Nos1 nitric oxide synthase 1, neuronal GBrowse link decreases expression ISO 12 39,812,500 39,869,484 RGD:6480464 CTD
G Nup214 nucleoporin 214 GBrowse link decreases expression ISO 3 11,079,165 11,165,173 RGD:6480464 CTD
G P22k15 cystatin related protein 2 GBrowse link decreases expression EXP 3 138,329,673 138,336,731 RGD:6480464 CTD
G Pah phenylalanine hydroxylase GBrowse link decreases expression ISO 7 24,175,898 24,243,592 RGD:6480464 CTD
G Pbsn probasin GBrowse link decreases expression EXP X 63,581,742 63,597,497 RGD:6480464 CTD
G Pcna proliferating cell nuclear antigen GBrowse link multiple interactions EXP 3 120,008,715 120,012,589 RGD:6480464 CTD
G Pla2g2a phospholipase A2, group IIA (platelets, synovial fluid) GBrowse link multiple interactions ISO 5 157,654,786 157,657,360 RGD:6480464 CTD
G Prkdc protein kinase, DNA activated, catalytic polypeptide GBrowse link decreases expression ISO 11 86,951,420 87,169,229 RGD:6480464 CTD
G Psbpc2 prostatic steroid-binding protein C2 GBrowse link decreases expression EXP 1 212,121,766 212,124,641 RGD:6480464 CTD
G Rad50 RAD50 homolog (S. cerevisiae) GBrowse link increases expression ISO 10 39,112,733 39,164,694 RGD:6480464 CTD
G Rassf7 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 GBrowse link increases expression ISO 1 201,411,162 201,413,083 RGD:6480464 CTD
G Rb1 retinoblastoma 1 GBrowse link multiple interactions ISO 15 53,828,881 53,962,099 RGD:6480464 CTD
G Rb1 retinoblastoma 1 GBrowse link decreases phosphorylation ISO 15 53,828,881 53,962,099 RGD:6480464 CTD
G Rb1 retinoblastoma 1 GBrowse link multiple interactions ISO 15 53,828,881 53,962,099 RGD:6480464 CTD
G Rdx radixin GBrowse link decreases expression ISO 8 55,404,000 55,450,183 RGD:6480464 CTD
G Rps6ka1 ribosomal protein S6 kinase polypeptide 1 GBrowse link decreases expression ISO 5 151,274,666 151,288,007 RGD:6480464 CTD
G Rps6ka3 ribosomal protein S6 kinase polypeptide 3 GBrowse link decreases expression ISO X 56,722,878 56,825,444 RGD:6480464 CTD
G Rrm2 ribonucleotide reductase M2 GBrowse link increases expression ISO 6 42,350,541 42,356,748 RGD:6480464 CTD
G Sbp spermine binding protein GBrowse link decreases expression EXP 10 13,183,508 13,186,889 RGD:6480464 CTD
G Scgb1d2 secretoglobin, family 1D, member 2 GBrowse link decreases expression EXP 1 212,016,491 212,019,480 RGD:6480464 CTD
G Scgb2a2 secretoglobin, family 2A, member 2 GBrowse link decreases expression EXP 1 212,162,326 212,165,105 RGD:6480464 CTD
G Sele selectin E GBrowse link multiple interactions ISO 13 79,813,455 79,822,845 RGD:6480464 CTD
G Sepp1 selenoprotein P, plasma, 1 GBrowse link decreases expression ISO 2 52,451,883 52,462,263 RGD:6480464 CTD
G Skap2 src kinase associated phosphoprotein 2 GBrowse link decreases expression ISO 4 80,149,846 80,300,111 RGD:6480464 CTD
G Smad3 SMAD family member 3 GBrowse link increases expression ISO 8 67,803,909 67,952,056 RGD:6480464 CTD
G Smc1a structural maintenance of chromosomes 1A GBrowse link decreases expression ISO X 41,503,393 41,547,830 RGD:6480464 CTD
G Srd5a1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) GBrowse link decreases expression EXP 17 3,845,190 3,879,165 RGD:6480464 CTD
G Star steroidogenic acute regulatory protein GBrowse link multiple interactions EXP 16 70,642,580 70,647,203 RGD:6480464 CTD
G Stat3 signal transducer and activator of transcription 3 (acute-phase response factor) GBrowse link increases expression ISO 10 89,821,078 89,872,970 RGD:6480464 CTD
G Tff1 trefoil factor 1 GBrowse link decreases expression ISO 20 9,526,674 9,530,534 RGD:6480464 CTD
G Tfpi2 tissue factor pathway inhibitor 2 GBrowse link decreases expression ISO 4 28,807,080 28,811,502 RGD:6480464 CTD
G Tgfa transforming growth factor alpha GBrowse link increases expression ISO 4 120,355,649 120,437,772 RGD:6480464 CTD
G Tlr2 toll-like receptor 2 GBrowse link multiple interactions ISO 2 175,607,990 175,613,992 RGD:6480464 CTD
G Tlr4 toll-like receptor 4 GBrowse link multiple interactions ISO 5 83,564,100 83,577,735 RGD:6480464 CTD
G Tnf tumor necrosis factor GBrowse link multiple interactions EXP 20 3,661,000 3,663,618 RGD:6480464 CTD
G Tnf tumor necrosis factor GBrowse link multiple interactions ISO 20 3,661,000 3,663,618 RGD:6480464 CTD
G Tp53 tumor protein p53 GBrowse link decreases expression ISO 10 56,399,721 56,411,150 RGD:6480464 CTD
G Vcam1 vascular cell adhesion molecule 1 GBrowse link multiple interactions ISO 2 212,277,654 212,297,376 RGD:6480464 CTD
G Vcp valosin-containing protein GBrowse link increases expression ISO 5 59,472,100 59,491,508 RGD:6480464 CTD
G Wrb tryptophan rich basic protein GBrowse link decreases expression ISO 11 36,453,285 36,467,217 RGD:6480464 CTD
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 501881
    chemical entity 501881
      atom 500845
        nonmetal atom 459609
          carbon atom 415667
            organic molecular entity 415660
              isoprenoid 15773
                terpene 15760
                  tetraterpene 481
                    carotene 481
                      acyclic carotene 136
                        lycopene 132
                          lycophyll 0
                          lycoxanthin 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 501881
    subatomic particle 500845
      composite particle 500845
        hadron 500845
          baryon 500845
            nucleon 500845
              atomic nucleus 500845
                atom 500845
                  main group element atom 470301
                    main group molecular entity 465185
                      s-block molecular entity 315220
                        hydrogen molecular entity 312457
                          hydrides 195649
                            organic hydride 120792
                              organic fundamental parent 120792
                                hydrocarbon 72692
                                  terpene 15760
                                    tetraterpene 481
                                      carotene 481
                                        acyclic carotene 136
                                          lycopene 132
                                            lycophyll 0
                                            lycoxanthin 0
paths to the root

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