Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 34,013 (bp)   Positions: 85
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SS/JrHsdMcwi (MCW) 
.042
.013
.001
.015
.003
.016
.015
.005
.009
.497
.031
--
--
.012
.0
.0
.213
--
--
.001
.012
.012
.02
.014
.03
--
.038
--
--
--
--
.264
.013
.004
.015
.008
--
--
--
.089
--
--
--
--
--
--
--
--
.013
.002
.056
.068
.03
--
--
--
--
--
.106
.033
--
--
--
.0
.0
.002
.822
--
.315
.205
.0
.993
.021
--
.019
--
.656
.76
.396
--
--
--
.094
.587
.001
Scpep1
Scpep1
Scpep1
Scpep1
Scpep1
Scpep1
Scpep1
Scpep1
Scpep1
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
G
T
G
T
C
T
C
T
T
G
A
T
T
T
G
A
T
T
T
T
A
C
A
T
3
3
8
T
6
T
G
A
C
C
2
G
T
T
T
A
G
T
G
T
C
G
8
A
C
C
2
G
T
C
C
C
2
T
T
T
C
A
T
C
A
G
T
C
T
A
A
G
C
A
C
4
A
T
T
C
G
G
A
G
C
  73,846,472
  73,846,525
  73,846,548
  73,846,565
  73,846,584
  73,846,674
  73,846,675
  73,846,682
  73,847,821
  73,848,068
  73,848,237
  73,848,637
  73,848,639
  73,849,807
  73,850,107
  73,851,128
  73,851,931
  73,852,817
  73,852,837
  73,853,391
  73,854,020
  73,854,022
  73,854,618
  73,854,621
  73,855,333
  73,855,425
  73,855,475
  73,855,734
  73,855,739
  73,855,753
  73,855,763
  73,856,943
  73,857,704
  73,857,842
  73,857,943
  73,858,033
  73,858,273
  73,858,279
  73,858,469
  73,859,539
  73,859,683
  73,859,697
  73,859,703
  73,859,729
  73,859,737
  73,859,751
  73,859,752
  73,859,775
  73,860,031
  73,860,340
  73,860,548
  73,860,769
  73,861,371
  73,861,421
  73,862,409
  73,862,434
  73,862,840
  73,862,841
  73,863,446
  73,863,660
  73,863,878
  73,863,902
  73,864,700
  73,865,730
  73,866,493
  73,866,720
  73,867,620
  73,869,578
  73,871,568
  73,871,894
  73,872,143
  73,872,169
  73,872,871
  73,872,887
  73,877,318
  73,877,543
  73,877,863
  73,878,061
  73,878,081
  73,878,144
  73,878,160
  73,878,224
  73,878,500
  73,878,704
  73,880,149
A
C
A
C
C/-
C
A
C
A
?
G
A
A
TA/-
A
G
C
C
5
-
C
T
G
C
-
-
-
T/-
-
T/2
-
G
T
T
-
T
-
-
-
G
G/A
G
G/A
G
G
G/A
-
A/G
-
-
-
-
C
C/T
2
-
2/-
T/-
C
3
-
G
2
T
C
A
C
2
C
3/AT
G
A
4
-
C/T
-
G
G
G
T
G/T
G/T
T
A
2