Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 83,356 (bp)   Positions: 236
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
ACI/EurMcwi (KNAW) 
1.0
.001
.001
.001
.0
.648
.999
.001
1.0
.0
.007
.01
.008
.003
.0
.076
.0
.052
.007
.001
.003
.002
.004
.473
.006
.047
.088
.001
.001
--
--
--
1.0
.024
.01
.0
.684
.221
.013
--
--
.49
.251
--
.03
.002
.042
.929
.012
.038
.155
.11
--
--
.018
.034
.271
.252
.039
.017
.106
.089
.533
.003
.001
.003
.151
.001
.001
.001
.007
.513
.106
.003
.002
.453
.035
.315
.014
.027
.006
.078
.989
.56
.419
.058
.64
.086
.295
.001
--
.01
.525
.113
.104
.007
.111
.278
--
--
.104
.176
.146
.058
.88
.121
.0
.035
.506
.004
.954
.158
.013
.108
.596
.063
.009
.002
.007
.537
.512
.0
.001
--
--
--
.054
.508
.269
.108
.112
.022
.0
.025
.0
.005
.006
.005
.001
.002
.024
.017
.243
.025
.058
--
.184
.076
.088
.175
.08
.07
.02
.043
.531
.389
.049
.009
.533
--
--
.009
--
--
--
--
--
--
.263
.985
--
.463
--
.021
.344
.2
.207
.184
.057
.304
.062
.552
.024
.224
--
--
--
--
--
--
.134
.041
.013
.588
.815
.519
.723
.018
.001
.017
.024
.015
.057
.046
.296
.085
.405
.469
.037
.06
.058
.028
.001
.003
.263
.089
.046
.027
.016
.127
.077
.015
.028
.001
.0
.006
.13
.066
.839
.009
.005
.058
.029
.277
.001
.058
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
Mapk8
G
2
C
2
A
4
G
C
T
G
A
T
C
A
A
A
C
31
T
G
G
C
A
A
A
T
G
G
T
T
G
G
G
G
G
T
G
T
A
C
G
T
C
T
T
C
A
T
T
C
T
C
G
A
T
G
3
A
A
G
A
C
G
A
T
G
T
A
C
C
T
A
T
A
A
C
T
C
T
C
G
G
A
T
T
3
G
G
T
T
T
G
A
2
T
C
T
A
C
G
G
A
G
A
A
T
G
A
C
C
T
T
T
A
T
C
A
C
T
A
C
A
C
C
G
A
T
5
G
C
A
G
C
T
A
T
T
9
5
A
3
5
C
4
C
G
T
A
T
C
C
2
T
C
G
C
T
G
C
2
C
A
A
C
C
C
C
C
C
5
3
A
G
C
T
T
A
T
T
C
C
T
G
C
C
A
G
A
A
G
A
G
T
C
G
G
G
G
4
G
C
A
3
C
T
G
T
A
A
G
A
T
A
T
G
C
A
A
T
G
G
T
G
T
A
A
G
A
A
G
T
A
T
C
C
G
  11,580,162
  11,580,611
  11,581,090
  11,581,550
  11,582,202
  11,582,366
  11,582,982
  11,583,151
  11,583,679
  11,584,396
  11,584,662
  11,584,679
  11,584,680
  11,584,707
  11,584,720
  11,584,832
  11,585,231
  11,585,281
  11,585,530
  11,585,649
  11,585,724
  11,585,856
  11,586,006
  11,586,175
  11,586,225
  11,586,675
  11,587,086
  11,587,824
  11,589,040
  11,589,277
  11,589,459
  11,589,460
  11,590,197
  11,590,386
  11,590,585
  11,590,675
  11,591,172
  11,595,302
  11,595,322
  11,595,397
  11,595,405
  11,595,466
  11,595,476
  11,595,501
  11,595,771
  11,597,153
  11,597,361
  11,597,387
  11,597,643
  11,598,007
  11,598,071
  11,601,656
  11,601,878
  11,601,908
  11,602,058
  11,602,066
  11,602,122
  11,602,126
  11,603,538
  11,603,873
  11,604,049
  11,604,097
  11,604,142
  11,604,924
  11,604,963
  11,605,043
  11,605,509
  11,605,639
  11,606,535
  11,606,717
  11,606,924
  11,608,496
  11,608,675
  11,608,710
  11,608,720
  11,609,085
  11,609,214
  11,609,259
  11,610,103
  11,610,502
  11,610,636
  11,611,406
  11,611,424
  11,611,433
  11,611,444
  11,611,650
  11,611,664
  11,611,800
  11,611,838
  11,612,228
  11,612,470
  11,613,500
  11,614,163
  11,614,441
  11,614,442
  11,614,992
  11,615,096
  11,615,406
  11,622,361
  11,622,418
  11,623,803
  11,624,495
  11,624,641
  11,624,840
  11,624,875
  11,625,595
  11,625,761
  11,625,769
  11,626,254
  11,626,584
  11,627,148
  11,627,350
  11,627,964
  11,628,027
  11,628,191
  11,628,403
  11,628,515
  11,629,636
  11,630,283
  11,630,435
  11,630,439
  11,630,568
  11,630,570
  11,630,660
  11,630,845
  11,630,848
  11,631,083
  11,631,755
  11,631,832
  11,632,207
  11,632,211
  11,632,273
  11,632,455
  11,632,487
  11,632,534
  11,632,593
  11,632,594
  11,632,617
  11,633,020
  11,633,030
  11,633,045
  11,633,050
  11,633,611
  11,633,831
  11,633,958
  11,634,209
  11,634,238
  11,634,299
  11,634,302
  11,634,475
  11,634,865
  11,634,997
  11,635,001
  11,635,326
  11,635,701
  11,635,757
  11,635,966
  11,636,322
  11,636,847
  11,637,506
  11,637,510
  11,638,415
  11,639,392
  11,639,769
  11,639,801
  11,639,814
  11,640,088
  11,640,353
  11,640,658
  11,641,011
  11,641,170
  11,642,060
  11,642,971
  11,643,175
  11,643,370
  11,643,791
  11,643,792
  11,644,478
  11,644,531
  11,644,778
  11,644,900
  11,644,936
  11,645,309
  11,645,450
  11,645,890
  11,646,035
  11,646,086
  11,647,267
  11,647,305
  11,647,417
  11,648,131
  11,648,155
  11,648,827
  11,649,113
  11,649,913
  11,649,932
  11,650,029
  11,650,328
  11,650,410
  11,651,424
  11,651,432
  11,651,534
  11,651,878
  11,651,941
  11,652,350
  11,652,424
  11,652,816
  11,653,064
  11,653,327
  11,653,357
  11,653,513
  11,653,790
  11,654,170
  11,654,641
  11,654,759
  11,655,089
  11,655,470
  11,655,730
  11,656,517
  11,656,836
  11,656,884
  11,656,901
  11,658,288
  11,658,742
  11,658,769
  11,659,001
  11,659,118
  11,659,901
  11,661,638
  11,661,794
  11,662,008
  11,662,056
  11,662,070
  11,662,079
  11,662,373
  11,662,459
C
-
T
2/-
-
-
T
G
2
A
C
C
2
G
21
3
T
-
C
A
A
T
T
C
G
A
A
A
C
-
G/2
?
A
A
A
C
2
2
G
T
2
2
A
G
A
A
-
C
2
T
G
G
A
-
2
A
-
-
C
4
G
G
A
G
G
A
3
T
G
A
C
T
C
G
G
T
A
A
A
A
A
A
G
C
C
-
7
A
C
C
A
21
G
-
T/-
T
C
G
C/-
2
A
G
A
G
-
C
A
G
T
A
-
A
C
G
2
2
G
T
C
-
2
-
2
2
-
2
G
-
C
T
G
G/C
C/G
A
T
C
C
-
-
C
-
-
A
4/-
T
4/3
2
-
2
T
T
-
2
A
A
T
2
A
T
2/-
C/-
T
2
T
A
9
T
T
A
-
-
T
A
A
C
-
C
C
C
T
T
C
A
T
2
G
C
A/G
A/20
C
G
A
2
C/21
5
G/3
A
A
-
A
A
G
-
2
C
C
C
G
G
A
C
C
5
-
A
T
-
T
A
7
A
7
A
C
C
2
A
AT/3
G
G/-
G
5
G
A
G
C