Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 293,789 (bp)   Positions: 217
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
LE/Stm (Illumina) (KNAW) 
.001
.001
.0
.001
.1
.006
.0
.008
.006
.019
.006
.012
.132
.003
.001
.0
.001
.009
.0
.002
.007
.001
.002
.002
--
.0
.098
.005
.0
.114
.117
.0
.0
.001
.0
.014
.001
.0
.001
.016
.023
.426
.027
.016
.001
.011
.252
.076
.037
--
--
--
.003
.048
.004
.013
.281
.0
.005
.0
.001
.002
.003
.049
.441
.098
.12
.042
.042
.319
.005
.095
.057
.039
.272
.0
--
--
--
.228
.002
.018
.045
.001
.007
.0
.054
.007
.0
.0
.002
.002
.124
.042
.0
.066
.411
.399
.053
.002
.536
.001
.003
.009
.006
--
--
--
--
.001
.06
.019
.109
.124
.01
.215
.246
.009
.012
.005
.0
.955
.002
--
--
.003
.071
.5
.116
.243
.002
.001
.447
--
--
--
--
.022
.013
.26
.004
.014
.009
.021
.017
.039
.01
.004
.001
.002
.0
.032
.016
.007
.001
.145
.152
.004
.003
.0
.005
.006
.0
.002
.011
.126
.021
.006
.2
.017
.177
.358
.767
.018
.016
.014
.002
.004
.001
.009
.008
.002
.012
.004
.034
.012
.012
.06
.001
.0
--
--
.009
.17
.007
.036
.286
.001
.003
.752
.001
.0
.001
.0
--
--
--
--
--
--
--
--
--
--
.005
.329
.856
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
Kcnq3
T
T
G
G
A
A
A
G
C
A
T
G
C
A
T
A
C
C
C
3
G
A
T
A
T
C
A
G
T
A
C
T
A
A
A
3
G
C
G
G
C
6
A
G
A
6
C
T
A
C
T
T
A
A
50
G
G
A
C
A
A
T
A
T
4
2
T
G
G
T
T
T
C
G
C
G
G
A
G
A
T
C
A
A
G
C
A
A
C
A
G
G
T
C
T
T
2
T
C
T
T
T
C
C
A
T
A
G
T
C
A
A
C
G
G
C
A
A
A
T
T
A
C
C
G
C
A
C
A
A
C
G
A
A
C
T
C
C
T
G
T
G
T
T
T
A
G
A
C
G
T
3
G
A
A
T
G
T
G
T
A
T
G
T
A
C
G
G
T
A
A
A
T
C
A
G
T
C
T
C
G
A
G
G
G
T
16
A
8
6
A
4
C
T
C
C
2
2
C
2
T
T
T
G
C
C
T
T
T
G
C
6
A
A
A
T
G
  106,662,856
  106,662,964
  106,669,316
  106,670,034
  106,670,847
  106,671,812
  106,674,635
  106,678,239
  106,678,397
  106,678,960
  106,679,080
  106,680,280
  106,681,161
  106,681,269
  106,681,275
  106,682,325
  106,684,586
  106,684,615
  106,684,654
  106,684,899
  106,685,201
  106,685,417
  106,685,746
  106,685,959
  106,687,718
  106,689,349
  106,689,468
  106,689,843
  106,689,951
  106,690,808
  106,692,783
  106,692,972
  106,694,813
  106,695,141
  106,695,576
  106,697,006
  106,697,544
  106,698,755
  106,701,150
  106,701,177
  106,701,975
  106,703,158
  106,705,140
  106,706,717
  106,706,719
  106,706,724
  106,708,617
  106,717,608
  106,718,355
  106,718,742
  106,718,994
  106,718,995
  106,721,381
  106,725,588
  106,726,735
  106,728,231
  106,729,130
  106,729,378
  106,731,534
  106,731,599
  106,732,066
  106,732,281
  106,732,590
  106,732,731
  106,733,227
  106,733,352
  106,733,592
  106,733,618
  106,733,772
  106,734,684
  106,735,053
  106,735,332
  106,735,781
  106,736,015
  106,736,911
  106,737,017
  106,737,647
  106,737,789
  106,738,040
  106,738,175
  106,738,431
  106,739,259
  106,739,951
  106,740,189
  106,740,769
  106,740,962
  106,741,033
  106,743,327
  106,744,133
  106,744,977
  106,745,020
  106,745,022
  106,745,946
  106,747,576
  106,748,339
  106,748,359
  106,748,887
  106,748,895
  106,749,056
  106,749,140
  106,750,067
  106,750,320
  106,750,490
  106,751,291
  106,752,002
  106,752,083
  106,752,123
  106,752,386
  106,752,548
  106,753,490
  106,755,150
  106,755,340
  106,755,584
  106,755,590
  106,755,625
  106,755,862
  106,755,888
  106,757,005
  106,757,031
  106,757,453
  106,757,721
  106,757,824
  106,758,662
  106,758,764
  106,758,823
  106,759,031
  106,759,064
  106,759,170
  106,759,227
  106,759,501
  106,759,776
  106,759,779
  106,759,935
  106,760,427
  106,760,500
  106,760,508
  106,760,555
  106,760,573
  106,760,724
  106,760,963
  106,761,166
  106,761,296
  106,761,735
  106,761,919
  106,761,920
  106,762,060
  106,762,398
  106,762,495
  106,762,508
  106,763,227
  106,763,273
  106,763,416
  106,763,457
  106,763,607
  106,763,620
  106,764,339
  106,764,340
  106,764,477
  106,764,669
  106,764,701
  106,764,705
  106,764,855
  106,765,016
  106,765,299
  106,765,397
  106,765,430
  106,765,485
  106,765,569
  106,765,667
  106,765,846
  106,765,908
  106,765,952
  106,765,978
  106,766,020
  106,766,079
  106,766,144
  106,766,168
  106,766,175
  106,766,197
  106,766,222
  106,766,328
  106,766,385
  106,766,581
  106,766,586
  106,766,673
  106,769,312
  106,769,314
  106,785,928
  106,793,653
  106,793,655
  106,797,630
  106,798,536
  106,814,034
  106,815,701
  106,824,508
  106,835,770
  106,858,830
  106,870,166
  106,870,777
  106,883,644
  106,901,397
  106,901,407
  106,901,409
  106,938,669
  106,941,609
  106,941,610
  106,941,617
  106,941,618
  106,941,620
  106,941,625
  106,941,628
  106,941,631
  106,941,637
  106,941,640
  106,942,177
  106,946,821
  106,956,053
-
A
11
3
-
T
G
A
A
G
A
T
T
-
C
G
A
T
G
-
A
G
5
T
C
T
C
-
C
T
T
G
128
G
2
-
3
T
A
A
C/3
6/-
G
4
3
-
T
A
C
T
2
A
T
T
-
C
A
G
G
G
C
C
G
C
-
2/-
T/17
G/21
C
C
C
C
T
T
T
A
T
3
A
-
C
3
C
C
A
T
2
G
A
5
-
T
A
T
C
C
-
G
T
C
A
C
T
T
G
G
T
A
A
T
T
G
T
7
C
T
-
G
G
A
C
G
A
T
T
T
G
T
T
C
G
T
G
G
T
C
G
T
C
39
C
A
C
G
A
G
A
G
T
C
C
-
A
-
G
C
C
A
A
C
C
C
C
C
C
G
A
A
C
G
G
G
C
T
G
C
C
A
A
T
A
G
A
-
C
T/-
16/-
C
8/-
6/-
G
-
C/3
42
2
C/G
-
-
T
2/-
-
-
C
2
T
G
G
A
A
A
5
-
3
C
A/9
5/3
2