Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 133,557 (bp)   Positions: 276
Conservation 
Genes ( + ) 
Genes ( - ) 
RGSC 3.4  
GK/Ox (ICL) 
.0
.0
--
.001
.0
.025
.0
.003
.0
.0
.0
.009
.002
.001
.001
.001
.257
.02
.001
.013
.046
.084
.009
.34
.334
.062
.181
.404
.74
.004
.003
.003
.027
.009
.002
.009
.133
.016
.005
.133
--
.0
.002
.012
.002
.001
.001
.006
.004
.003
.816
.005
--
--
--
--
--
--
--
--
--
--
--
.013
.024
.006
.01
.009
--
.001
.005
.001
.003
.001
--
--
.072
.039
.051
.251
.35
.001
.026
.002
.0
--
--
--
.251
.0
.982
.384
.004
.0
.754
.006
.0
.002
.0
.0
.979
1.0
.009
.291
.015
.001
.0
.364
.001
.002
.001
.603
.028
.021
.002
.0
.0
.0
.0
.004
--
.0
.0
.0
.051
.0
.0
.0
.002
.0
.005
.0
.0
--
.001
.0
.003
.0
.001
.012
.022
.231
.001
.008
.003
.021
.002
.001
.011
.0
.998
.171
.006
.0
.002
.021
.001
.0
.002
.005
.003
--
--
--
--
--
.037
.004
.0
.0
.0
.085
.0
.001
.004
.009
.001
.129
.015
.002
.001
.003
.0
.011
.966
.001
.001
.0
.0
--
.001
.001
.0
.001
.003
.09
.023
.001
.0
.003
.004
.002
.008
.0
.001
.0
.0
.0
.0
.0
.005
.055
.001
.071
.002
.0
.136
.13
.005
.001
.003
.337
.001
.0
.011
.2
.004
.001
.001
.001
.009
.1
.004
.0
.0
.002
.0
.005
.005
.009
--
.003
.772
.745
.0
.001
.025
.004
.06
.0
.017
.01
.013
.141
.174
.259
.237
.005
.001
.001
.039
.03
.0
.0
.035
.027
.015
.003
.002
.0
.0
.006
.001
.0
.0
.0
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Wrn
Purg
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
C
C
C
G
G
G
A
A
A
T
A
T
G
G
G
T
T
T
C
G
T
A
A
T
G
C
A
C
C
A
A
C
A
T
T
T
G
G
G
C
C
C
A
C
C
A
C
A
T
A
T
A
T
T
T
A
A
A
T
T
G
T
C
T
C
T
T
G
C
T
C
A
G
A
C
G
A
C
T
C
T
A
A
A
A
G
A
C
T
A
A
A
C
G
C
T
T
A
A
C
C
T
A
A
A
G
C
A
C
A
G
A
G
A
C
G
T
T
T
T
C
G
C
A
T
G
C
A
C
T
T
G
G
C
C
G
C
C
A
T
A
G
T
T
T
G
T
A
C
A
A
G
T
T
A
T
G
T
A
A
C
G
A
T
T
T
T
T
G
C
C
G
C
G
T
A
C
A
C
T
C
A
T
T
T
G
G
A
G
G
C
G
A
C
G
A
G
G
G
A
A
C
C
T
T
C
T
T
C
C
A
T
A
T
C
C
G
T
T
G
C
T
T
C
C
A
A
C
T
G
A
C
C
C
C
A
A
C
T
G
G
T
A
T
C
C
T
T
T
A
T
T
A
C
G
G
A
A
C
G
A
C
C
A
T
C
T
G
C
A
G
G
A
G
C
T
  62,535,462
  62,535,527
  62,540,154
  62,541,523
  62,542,568
  62,543,158
  62,543,182
  62,543,714
  62,543,776
  62,543,907
  62,544,255
  62,544,936
  62,544,982
  62,545,004
  62,545,293
  62,545,960
  62,547,616
  62,548,156
  62,548,292
  62,548,495
  62,548,629
  62,548,633
  62,548,695
  62,549,271
  62,549,302
  62,549,571
  62,549,599
  62,549,698
  62,550,089
  62,550,308
  62,550,309
  62,551,226
  62,551,302
  62,551,956
  62,552,507
  62,552,767
  62,554,217
  62,554,541
  62,555,158
  62,555,449
  62,555,897
  62,556,240
  62,556,859
  62,556,947
  62,557,114
  62,557,730
  62,557,791
  62,559,191
  62,559,564
  62,559,646
  62,559,827
  62,560,397
  62,562,897
  62,563,336
  62,563,805
  62,563,934
  62,565,950
  62,566,525
  62,566,680
  62,567,198
  62,567,734
  62,568,178
  62,568,946
  62,569,282
  62,569,474
  62,569,544
  62,569,552
  62,570,189
  62,570,656
  62,570,835
  62,571,905
  62,572,417
  62,572,423
  62,572,653
  62,572,882
  62,572,904
  62,573,323
  62,573,345
  62,573,379
  62,573,484
  62,573,507
  62,574,062
  62,574,248
  62,574,378
  62,574,594
  62,574,754
  62,574,771
  62,574,797
  62,574,873
  62,574,945
  62,575,059
  62,575,251
  62,575,310
  62,575,512
  62,575,553
  62,575,897
  62,575,915
  62,576,017
  62,576,173
  62,576,266
  62,576,392
  62,576,420
  62,576,555
  62,576,624
  62,576,789
  62,577,168
  62,577,457
  62,577,633
  62,577,668
  62,578,188
  62,578,371
  62,578,685
  62,579,824
  62,580,324
  62,580,472
  62,580,474
  62,580,475
  62,580,476
  62,580,669
  62,581,181
  62,583,098
  62,583,556
  62,583,658
  62,583,864
  62,586,241
  62,586,477
  62,586,654
  62,586,655
  62,586,697
  62,586,799
  62,586,831
  62,587,451
  62,588,095
  62,590,693
  62,591,085
  62,591,225
  62,591,648
  62,591,693
  62,591,697
  62,591,816
  62,591,831
  62,591,891
  62,593,401
  62,593,529
  62,593,628
  62,593,713
  62,593,758
  62,595,621
  62,595,692
  62,595,909
  62,596,063
  62,596,268
  62,596,407
  62,596,420
  62,596,571
  62,596,781
  62,596,868
  62,596,893
  62,597,136
  62,597,146
  62,597,290
  62,597,442
  62,597,523
  62,597,572
  62,597,637
  62,597,699
  62,598,301
  62,598,412
  62,598,489
  62,598,580
  62,599,042
  62,599,143
  62,599,445
  62,599,756
  62,599,767
  62,599,781
  62,600,244
  62,601,108
  62,601,141
  62,601,214
  62,601,253
  62,603,211
  62,603,698
  62,604,318
  62,604,717
  62,605,265
  62,606,102
  62,607,159
  62,607,185
  62,607,571
  62,609,135
  62,613,294
  62,613,506
  62,613,662
  62,615,115
  62,616,832
  62,616,904
  62,617,077
  62,617,085
  62,617,808
  62,617,960
  62,618,360
  62,618,376
  62,618,435
  62,618,783
  62,619,209
  62,619,535
  62,619,723
  62,620,507
  62,620,839
  62,620,956
  62,621,183
  62,621,251
  62,621,287
  62,621,801
  62,622,300
  62,622,841
  62,625,100
  62,625,801
  62,626,163
  62,626,983
  62,627,006
  62,647,131
  62,648,381
  62,650,102
  62,650,210
  62,650,294
  62,650,410
  62,650,589
  62,650,938
  62,651,349
  62,651,374
  62,651,671
  62,652,591
  62,652,604
  62,653,021
  62,653,151
  62,653,278
  62,653,500
  62,658,106
  62,659,019
  62,660,067
  62,661,540
  62,661,547
  62,663,250
  62,663,294
  62,663,516
  62,663,849
  62,664,720
  62,665,540
  62,666,851
  62,666,992
  62,666,995
  62,667,071
  62,667,076
  62,667,092
  62,667,103
  62,667,144
  62,667,169
  62,667,171
  62,667,336
  62,667,546
  62,667,579
  62,667,580
  62,667,641
  62,667,665
  62,667,702
  62,667,809
  62,668,245
  62,668,253
  62,668,255
  62,668,364
  62,668,521
  62,668,532
  62,668,533
  62,668,683
A
T
T
A
A
C
G
C
G
C
G
C
A
A
A
C
A
G
T
A
C
G
G
C
T
T
G
T
T
G
T
T
G
A
C
C
A
C
A
G
T
T
G
A
A
T
G
G
C
G
C
C
C
C
C
G
G
A/G
C
A
T
C
T
C
T
C
C
T
T
C
T
T
A
G
T
A
G
T
C
A
C
G
G
G
G
A
G
T
C
G
G
G
T
T
T
C
G
C
C
T
T
G
G
G
G
A
A
G
T
C
A
G
T
G
T
C
A
A
C
G
T
A
T
G
G
T
T
T
A
G
G
A
A
T
T
A
T
G
C
C
G
C
C
C
C
T
C
G
T
G
G
A
C
C
G
C
A
A
T
G
A
C
G
C
C
C
G
C
A
T
T
A
T
A
C
G
T
G
T
G
T
C
G
A
C
C
A
G
A
C
T
A
G
T
A
G
A
A
C
G
A/T
T
T
C
G
T
C
G
T
T
T
C
G
C
G
T
A
C
A
A
T
C
A
T
T
G
G
G
G
A
G
T
T
T
T
G
G
T
C
A
G/C
C
T
A
T
A
C
C
C
G
C
C
G
T
T
A
G
G
T
A
G
G
A
G
A
T
C
A
T
C
A
T
G
T
G
A