Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 106,801 (bp)   Positions: 198
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
WAG/Rij (KNAW) 
.535
.0
.293
.772
.0
.003
.004
.005
.089
.0
.001
.0
.0
.001
.297
.0
.002
.001
.002
.076
.02
.153
.009
.015
.981
.006
.023
.012
.658
.007
.0
.001
.076
.094
.288
.014
.006
.012
.009
.007
.0
.158
.161
.007
.001
.007
--
--
.225
.367
.003
.001
.0
.462
.009
.836
--
.006
--
.021
.006
.0
.268
.001
.002
.304
--
--
--
--
--
.004
--
.0
.004
.012
.039
.221
--
--
--
--
--
--
--
.281
.004
.0
.001
.001
.027
.003
.005
.002
.005
.94
.001
.005
.004
.007
.506
.507
.662
.001
.002
.001
.011
.0
.001
.011
--
--
.014
.001
.0
.0
.397
.012
.018
.001
.0
.223
.086
.086
.0
.0
.0
.023
.004
.993
.999
.352
.0
--
.022
.011
.028
.873
.01
.0
.0
.001
.0
.001
.015
.017
.0
.0
.005
.007
.028
.007
.085
.0
.995
.326
.002
.0
.125
.023
.004
.001
.005
.066
.998
--
.963
--
--
.005
.0
.073
.111
.096
.001
.001
.002
.001
.007
.001
.014
.007
.001
.049
.02
.157
--
.005
.005
.002
.005
.001
.001
.0
.016
.998
.69
.991
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
Smad3
A
A
A
G
C
G
T
T
C
A
A
G
T
6
T
A
10
T
G
C
C
C
G
T
T
C
2
A
G
A
G
A
A
18
G
T
A
T
A
T
A
C
2
C
8
2
T
T
A
C
C
2
G
T
20
G
G
G
10
T
G
C
G
6
G
C
G
G
2
G
G
30
A
C
A
C
C
C
2
G
G
C
C
T
T
G
T
A
G
C
G
T
A
T
A
C
T
T
C
G
C
C
24
C
A
A
T
G
A
G
G
A
A
T
A
T
A
A
G
C
C
A
A
A
A
T
C
C
G
G
C
G
T
C
A
T
A
G
C
G
T
G
A
A
G
C
C
A
G
T
C
A
C
G
C
C
6
A
T
A
A
T
G
C
C
G
C
T
5
C
C
G
G
2
A
5
G
A
6
G
A
A
T
T
2
16
A
T
11
C
A
A
T
T
T
T
C
A
  68,292,143
  68,292,712
  68,294,380
  68,295,378
  68,297,969
  68,298,616
  68,300,243
  68,300,279
  68,300,301
  68,302,494
  68,303,224
  68,303,419
  68,303,486
  68,303,515
  68,303,570
  68,303,859
  68,304,014
  68,304,829
  68,305,026
  68,305,762
  68,305,889
  68,305,950
  68,306,594
  68,306,840
  68,307,245
  68,307,309
  68,308,049
  68,309,105
  68,310,944
  68,311,362
  68,312,187
  68,313,506
  68,314,565
  68,314,662
  68,315,141
  68,318,144
  68,318,370
  68,319,627
  68,319,629
  68,319,630
  68,320,552
  68,321,854
  68,321,857
  68,322,545
  68,327,725
  68,327,731
  68,329,770
  68,331,904
  68,332,120
  68,332,751
  68,333,764
  68,334,457
  68,334,609
  68,334,759
  68,335,700
  68,336,502
  68,337,072
  68,338,423
  68,340,001
  68,341,767
  68,343,472
  68,344,237
  68,345,673
  68,346,933
  68,348,258
  68,350,523
  68,350,684
  68,350,694
  68,350,736
  68,350,749
  68,350,789
  68,351,337
  68,351,444
  68,351,811
  68,351,821
  68,355,353
  68,355,737
  68,355,968
  68,356,122
  68,356,265
  68,356,534
  68,356,558
  68,356,635
  68,357,156
  68,357,193
  68,357,241
  68,357,942
  68,358,116
  68,360,752
  68,361,042
  68,361,331
  68,362,290
  68,363,101
  68,363,236
  68,363,258
  68,363,752
  68,363,989
  68,364,035
  68,364,057
  68,364,197
  68,364,817
  68,364,818
  68,364,938
  68,365,568
  68,365,769
  68,365,937
  68,366,069
  68,366,267
  68,366,333
  68,367,252
  68,367,802
  68,367,816
  68,368,076
  68,368,309
  68,368,498
  68,368,867
  68,369,310
  68,369,891
  68,369,919
  68,372,034
  68,372,174
  68,374,049
  68,374,881
  68,374,882
  68,378,902
  68,379,452
  68,379,458
  68,379,630
  68,379,707
  68,379,742
  68,379,778
  68,379,918
  68,380,871
  68,381,620
  68,382,090
  68,382,147
  68,382,516
  68,382,765
  68,382,811
  68,382,813
  68,382,814
  68,383,164
  68,383,567
  68,383,692
  68,383,955
  68,384,597
  68,384,660
  68,384,662
  68,384,701
  68,384,900
  68,385,155
  68,385,505
  68,385,841
  68,385,992
  68,386,387
  68,386,852
  68,386,967
  68,387,288
  68,387,632
  68,387,886
  68,387,908
  68,388,044
  68,388,520
  68,388,604
  68,388,625
  68,388,966
  68,389,070
  68,389,235
  68,389,315
  68,389,379
  68,390,098
  68,390,216
  68,390,704
  68,390,874
  68,390,898
  68,390,901
  68,391,119
  68,391,290
  68,391,565
  68,391,853
  68,392,851
  68,392,852
  68,393,094
  68,393,239
  68,393,276
  68,393,292
  68,393,783
  68,394,221
  68,394,468
  68,395,046
  68,395,539
  68,395,875
  68,395,999
  68,396,169
  68,396,230
  68,396,435
  68,396,445
  68,396,805
G
G
2
A
T
A
C
C
T
G
G
A
A
-
C
G
-
A
A
A
T
T
6
C
C
T
-
G
C
G
A
G
G
18/-
T
C
T
8
C
G
-
C/3
2/-
T
8/-
-
A
-
T
2
A
-
T
C
20/-
5
A
2
-
2
A
T
C
-
T
7
3
-
-
25/5
C
-
C
-
-
A
T
T
-
A
T
G
T
106
C
A
-
G
A
T
A
C
G
C
G
T
G
C
T
A
2
A
-
T
G
3
C
A
C
A
T
G
G
G
G
C
3
G
5
T
T
A/7
T
T
G
C
T
A
A
A
T
A
G
T
G
2
C
A
4
3
A
T
G
G
A
A
T
C
T
C
T
AG/3
T
A
T
A
-
G
A
G
T
C
11
-
3
11
3
3
-
C/4
T
A
A
-
A/-
5/-
A
C
-
A
3
T
C
C
-
16/-
G
C
11/-
T
G
9
A
C
C
C
T
T