Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 33,875 (bp)   Positions: 125
Conservation 
Genes ( + ) 
Genes ( - ) 
RGSC 3.4  
LL/MavRrrc (ICL) 
.0
.002
.0
.006
.001
.0
.001
.0
.006
.001
.021
.0
.001
.0
.001
.0
.0
.056
.001
.0
.0
.998
.145
.002
.002
.007
.0
.0
.0
.245
.001
.0
.0
.001
.0
.0
.002
.001
.007
.002
.0
.0
.557
.214
.0
.014
.0
.003
.003
.0
.002
.005
.221
.001
.004
.035
.303
.601
.0
.0
.001
.015
.021
.002
.002
.299
.002
.004
.0
.001
.001
.15
.135
.005
.002
.008
.01
.006
.0
.0
.0
.0
.017
.023
.01
.0
.004
.001
.002
.018
.003
.038
.002
.005
.0
.001
.656
.0
.029
.018
.034
.037
.003
.001
.0
.0
.013
.0
.0
.001
.0
.011
.001
.002
1.0
.001
.017
.002
.0
.0
.002
.397
.0
.999
1.0
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
Scnn1g
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
A
G
A
C
A
A
C
G
G
C
G
C
G
G
C
C
A
G
C
T
A
G
G
T
C
A
T
G
G
G
G
G
G
C
G
G
G
A
G
C
G
C
G
C
T
C
C
C
G
T
G
T
A
A
T
C
G
T
T
C
A
T
A
G
C
C
G
C
C
C
A
A
G
A
A
C
A
A
C
T
C
T
G
G
T
A
C
T
G
T
C
T
G
A
A
T
C
A
A
G
G
G
G
C
C
A
A
C
C
T
A
A
G
T
A
T
G
C
T
T
T
T
C
G
  180,555,765
  180,556,517
  180,556,553
  180,556,692
  180,557,024
  180,557,490
  180,557,545
  180,557,589
  180,557,639
  180,557,784
  180,557,971
  180,558,222
  180,558,672
  180,558,749
  180,558,753
  180,559,463
  180,560,024
  180,560,534
  180,560,639
  180,561,219
  180,562,070
  180,563,088
  180,563,242
  180,563,435
  180,563,562
  180,563,779
  180,563,818
  180,563,849
  180,563,850
  180,564,598
  180,565,591
  180,566,810
  180,566,927
  180,567,746
  180,567,770
  180,568,239
  180,568,642
  180,568,736
  180,569,040
  180,569,139
  180,569,454
  180,569,510
  180,569,658
  180,570,330
  180,570,477
  180,570,820
  180,570,921
  180,571,228
  180,571,239
  180,571,588
  180,571,640
  180,571,802
  180,571,942
  180,572,009
  180,572,110
  180,572,626
  180,572,803
  180,574,084
  180,574,240
  180,574,281
  180,574,776
  180,574,835
  180,574,899
  180,575,462
  180,575,792
  180,575,964
  180,576,899
  180,576,915
  180,576,968
  180,577,068
  180,577,143
  180,577,400
  180,577,405
  180,577,439
  180,577,590
  180,577,675
  180,578,078
  180,578,254
  180,578,797
  180,578,799
  180,578,836
  180,579,168
  180,579,280
  180,579,631
  180,579,958
  180,580,246
  180,580,265
  180,580,502
  180,580,827
  180,580,989
  180,581,152
  180,581,317
  180,581,432
  180,581,434
  180,581,468
  180,581,513
  180,581,629
  180,581,692
  180,581,768
  180,581,778
  180,581,780
  180,581,823
  180,581,914
  180,581,972
  180,581,981
  180,582,082
  180,582,222
  180,582,475
  180,582,476
  180,582,488
  180,582,490
  180,582,572
  180,582,820
  180,582,859
  180,583,752
  180,584,927
  180,585,510
  180,585,545
  180,586,696
  180,586,959
  180,586,973
  180,588,130
  180,588,200
  180,588,275
  180,588,368
C
G
A
G
T
C
T
T
C
A
A
A
A
A
T
A
T
T
A
T
C
G
A
A
G
T
G
C
A
A
A
C
C
A
T
A
A
A
C
T
C/G
A
T
A
G
A
A
T
T
A
C
A
C
G
G
A
T
A
C
G
T
G
C
G
A
T
T
T
T
T
T
G
G
A
G
G
A
G
G
T
C
T
A
T
A
C
T
T
G
A
C
T
A
A
G
G
C
T
C
G
A
A
A
A
T
A
G
T
G
G
C
G
G
T
C
G
C
A
T
C
C
C
C
T
T