Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 117,606 (bp)   Positions: 82
Conservation 
Genes ( + ) 
Genes ( - ) 
RGSC 3.4  
SHRSP/Gcrc (ICL) 
.0
.0
.001
--
.001
--
.0
.002
.002
.01
.026
.002
.012
--
--
.0
.004
.003
.006
.0
.052
.0
.0
.004
--
--
--
--
--
--
--
--
--
--
--
--
.035
.0
.004
.0
--
--
--
--
--
--
--
--
--
--
--
.001
.005
.007
.033
.405
.443
.004
.003
.016
.002
.011
.014
--
--
.12
--
--
--
--
--
--
--
--
--
--
--
.962
.0
.0
.012
.256
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Phka2
Phka2
Phka2
Phka2
Phka2
Phka2
Phka2
Phka2
Phka2
T
A
A
A
C
G
G
G
T
C
T
A
A
G
G
T
G
T
G
A
G
A
C
C
C
C
T
T
C
T
C
A
G
T
T
C
G
T
G
A
C
T
C
T
A
C
A
C
A
C
A
C
A
A
C
T
C
A
C
T
T
A
G
C
A
C
C
A
A
A
A
C
G
G
G
T
C
C
G
G
G
A
  55,466,885
  55,467,698
  55,469,161
  55,506,602
  55,513,771
  55,516,421
  55,528,647
  55,529,513
  55,532,189
  55,533,196
  55,535,377
  55,535,776
  55,536,178
  55,536,376
  55,536,380
  55,536,592
  55,537,069
  55,537,474
  55,538,671
  55,538,992
  55,539,232
  55,539,827
  55,541,133
  55,541,437
  55,541,777
  55,543,151
  55,543,171
  55,543,542
  55,543,682
  55,544,172
  55,544,173
  55,544,174
  55,544,828
  55,546,825
  55,546,961
  55,547,309
  55,548,179
  55,548,380
  55,549,190
  55,550,517
  55,550,738
  55,550,759
  55,550,787
  55,550,852
  55,551,228
  55,553,089
  55,553,121
  55,553,293
  55,553,359
  55,553,512
  55,555,045
  55,556,243
  55,557,464
  55,557,987
  55,558,099
  55,558,219
  55,558,279
  55,558,388
  55,559,043
  55,559,997
  55,561,559
  55,563,771
  55,563,922
  55,564,259
  55,564,513
  55,564,813
  55,566,986
  55,568,179
  55,568,891
  55,569,156
  55,569,357
  55,569,388
  55,569,521
  55,571,045
  55,571,229
  55,574,375
  55,575,404
  55,578,389
  55,578,571
  55,578,610
  55,578,740
  55,579,859
C
G
G
T
T
C
C
C
C
T
G
C
G
G/C
G/C
C
T
C
A
G
A
C
G
T
T
T
C
C
T
A
G
C
T
C
C
T
T
G
A
G
G
C
G
C
G
A
A/T
T
G
C/T
A/C
T
G
G
T
C
T
G
G
C
G
G
A
C/T
C
A
T
C
G
A/C
G
G
C
A
A
T/C
T
G
A
T
A
C