Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 121,116 (bp)   Positions: 246
Conservation 
Genes ( + ) 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
LE/Stm (SOLiD) (KNAW) 
.136
.002
--
.031
.091
.033
.145
.009
.008
.131
.027
.002
.039
.007
.634
.647
.165
.108
.663
--
--
.083
.194
.112
.26
.058
.019
.115
--
--
--
.003
.105
.017
.003
.004
.026
.072
.025
--
--
.081
.038
.025
.039
.189
.33
--
--
--
--
.015
.944
.095
.104
.067
.025
.438
--
--
.008
.006
.098
.101
.101
.765
.457
.003
.016
.048
.001
.002
.004
.008
.013
--
--
--
--
.116
.047
.089
.073
.013
.014
.004
.038
.037
.159
.012
.059
.007
.002
.007
.0
.003
--
--
--
--
--
.001
.002
.03
.262
.012
.052
.004
--
.034
.063
.041
.023
.057
.059
--
.999
.0
.003
.019
.005
.007
.3
.014
.015
.629
.369
.014
.005
--
.601
.069
.012
.156
.001
.001
.0
.261
.252
.212
.005
.005
.0
.321
.002
.038
.037
--
.272
.003
.048
.007
.002
.01
.083
.025
.019
.001
.001
.06
.029
.033
.068
--
.013
.026
.121
--
.003
.006
.005
.011
.02
.038
--
--
--
.009
.109
.075
.006
.686
.0
.009
.003
.03
.063
.131
.071
.003
.01
.064
.147
--
--
.003
.003
.0
--
.029
.017
.005
.02
.031
.008
.271
.007
.0
.001
1.0
.002
.326
.016
.0
.022
.005
.001
.019
.0
.002
--
--
--
.012
.029
.046
.002
.076
.001
.007
.002
.004
.142
.015
.0
.04
.003
.012
.015
.0
.0
.0
.013
.026
.002
.001
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
Kcnh3
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
G
A
T
A
G
T
T
A
T
C
C
C
A
G
G
C
C
A
G
G
A
T
C
C
C
A
A
A
G
A
C
A
110
T
G
G
A
T
C
T
C
G
T
A
C
T
2
A
T
C
G
T
G
G
A
A
C
T
T
G
T
G
2
C
G
G
G
T
C
G
A
T
A
T
G
C
A
G
G
T
G
A
C
T
G
C
G
G
C
T
A
G
C
2
T
G
C
C
T
2
T
C
A
A
G
C
T
T
C
T
A
T
A
A
A
G
A
T
T
C
G
C
T
G
10
G
A
A
G
A
3
A
G
C
A
C
G
A
A
C
T
T
G
G
T
24
T
T
T
A
T
G
C
T
C
C
9
A
C
T
T
T
T
A
T
G
T
G
C
T
C
G
A
G
G
C
T
A
T
C
T
A
A
G
G
G
G
C
A
C
A
2
T
G
C
T
T
T
G
C
C
C
T
C
A
4
A
G
G
T
T
A
G
T
C
G
G
T
A
A
T
C
C
T
T
T
A
G
A
T
C
C
C
C
T
8
A
T
A
A
C
A
G
G
C
  115,294,409
  115,294,482
  115,295,053
  115,296,174
  115,296,288
  115,296,823
  115,297,755
  115,297,961
  115,297,974
  115,298,012
  115,298,177
  115,298,189
  115,298,214
  115,298,577
  115,298,827
  115,298,837
  115,299,266
  115,300,401
  115,300,490
  115,300,660
  115,300,712
  115,301,252
  115,301,312
  115,301,990
  115,302,300
  115,303,376
  115,303,451
  115,303,636
  115,304,075
  115,304,132
  115,304,348
  115,304,490
  115,304,717
  115,304,938
  115,305,362
  115,305,657
  115,306,134
  115,306,762
  115,307,478
  115,307,716
  115,307,722
  115,308,073
  115,308,082
  115,308,320
  115,308,376
  115,308,395
  115,308,460
  115,308,590
  115,308,679
  115,308,680
  115,309,092
  115,309,458
  115,311,188
  115,311,898
  115,313,052
  115,313,059
  115,313,071
  115,313,139
  115,313,325
  115,313,434
  115,313,883
  115,313,959
  115,314,260
  115,315,768
  115,315,771
  115,316,095
  115,316,526
  115,316,940
  115,317,215
  115,317,890
  115,317,934
  115,318,283
  115,318,284
  115,318,285
  115,319,002
  115,319,141
  115,319,483
  115,319,528
  115,320,290
  115,320,583
  115,321,049
  115,321,192
  115,321,279
  115,322,606
  115,322,640
  115,323,148
  115,323,568
  115,323,643
  115,323,939
  115,324,064
  115,324,101
  115,324,199
  115,324,446
  115,324,515
  115,324,753
  115,325,201
  115,326,101
  115,326,117
  115,326,909
  115,327,650
  115,327,707
  115,328,114
  115,328,115
  115,328,146
  115,328,213
  115,328,632
  115,329,151
  115,329,703
  115,330,657
  115,331,551
  115,331,669
  115,332,077
  115,332,137
  115,332,521
  115,332,523
  115,333,196
  115,333,495
  115,334,030
  115,334,060
  115,334,385
  115,334,428
  115,334,538
  115,334,587
  115,334,726
  115,334,760
  115,334,925
  115,334,990
  115,335,573
  115,335,664
  115,335,856
  115,336,000
  115,336,467
  115,337,085
  115,337,119
  115,337,211
  115,337,255
  115,337,383
  115,337,883
  115,337,885
  115,339,512
  115,339,934
  115,342,486
  115,342,498
  115,342,700
  115,343,106
  115,345,495
  115,347,456
  115,347,879
  115,348,334
  115,348,590
  115,349,113
  115,349,609
  115,350,319
  115,350,460
  115,351,056
  115,351,253
  115,351,529
  115,351,645
  115,352,019
  115,352,701
  115,353,080
  115,353,167
  115,354,350
  115,354,644
  115,355,101
  115,357,467
  115,358,297
  115,359,164
  115,359,358
  115,359,380
  115,359,456
  115,359,482
  115,359,604
  115,360,357
  115,361,717
  115,361,718
  115,361,728
  115,361,945
  115,362,862
  115,363,068
  115,363,161
  115,364,051
  115,364,217
  115,364,302
  115,364,833
  115,365,071
  115,365,120
  115,365,531
  115,366,176
  115,366,540
  115,366,650
  115,366,672
  115,367,127
  115,367,371
  115,367,427
  115,368,390
  115,370,005
  115,370,017
  115,371,205
  115,371,637
  115,371,945
  115,372,792
  115,372,952
  115,373,094
  115,373,237
  115,376,785
  115,376,911
  115,377,588
  115,379,065
  115,379,267
  115,379,662
  115,379,963
  115,381,342
  115,381,667
  115,382,411
  115,383,810
  115,383,829
  115,383,875
  115,384,819
  115,385,738
  115,386,493
  115,386,562
  115,386,819
  115,388,545
  115,388,686
  115,390,044
  115,390,467
  115,390,679
  115,391,338
  115,394,246
  115,395,349
  115,396,210
  115,399,507
  115,399,548
  115,401,972
  115,402,889
  115,403,389
  115,403,931
  115,405,423
  115,405,980
  115,406,761
  115,406,783
  115,406,881
  115,407,762
  115,412,787
  115,414,545
T/G
A
T
C
T
A
T/6
C
G
C
T
T
T
2
-
T
T
T
T
C
A
G
G
T
C/T
A
G
T
A/11
G/2
T
T
G
110/-
C
T
G/5
G
G
T
C
T
T
A
G
T
C
-
A/2
T/C
T
-
G
12
G/C
A/4
A/G
T
C
2
A
C
A
-
3
2
A
A
A
T
A
G
A
C
C
A
A
G
A
2
T/C
A
G
T
C
A
T
A
A
C/T
2
2
3
T
-
A
G/A
T
C/3
C
-
G
T
G
A/2
A
T
T/C
C
A
5
G
C
A/3
3
G
C
T
C
T/A
C/T
A
A
3
C
-
A
G
T
G/A
G
3/-
2
A
T
G
T
G/T
A/G
G
3
2
-
A
A
A
24/-
-
A
C
G
C
G/A
T
C
T
T
-
G
T
T/G
A
T/-
T/-
T
A
G/A
C
A
T
C
T
A
G
G/-
G/T
C/2
C
C
T/C
G
C
G
G
3
A
A
A
T
G
T
G
-
2
A
T
G
C
A
43
2
A
T
G
T
3
-
G
A
A
C
T/11
G
A
T/C
T
T
A
-
G
A/G
T/A
T
G
G
T/C
G
G
A
G
C
T
C/T
A
G
2
-
C
C
G
G
T
G
A
A
T