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  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 106,499 (bp)   Positions: 375
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
COP/CrCrl (MCW & UW) 
.054
.001
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.003
.005
.002
.0
.0
.0
.004
.002
.005
.007
.021
.003
.001
.001
.001
.061
.059
.001
.006
.007
.001
.001
.001
.269
.046
.007
.003
.068
.061
.093
.091
.072
.068
.292
.09
.081
.1
.102
.074
.005
.007
.015
.101
.062
.108
.098
.048
.338
.333
.145
.126
.535
.055
.362
.014
.02
--
--
--
.053
.01
.645
.331
.036
.064
--
.489
.525
.503
.456
.018
.024
.025
.03
.005
.149
.042
.001
.088
.234
.001
.39
.442
.193
--
--
.068
.24
.008
.001
.003
.01
.458
.647
.856
.998
.999
1.0
1.0
1.0
--
.001
--
.065
.321
.088
--
.034
.855
.948
.154
.006
.051
.024
.038
.138
.252
--
--
.022
.127
.143
.003
--
--
.063
.534
.107
.018
.054
.047
.002
.186
.134
.0
.012
.001
.646
.617
.0
.002
.0
.001
.056
.0
.001
.117
.181
.02
.015
.001
.149
.17
.207
.011
.037
.035
.013
.021
.165
.044
.031
.011
.003
.002
.032
.058
.01
.001
--
.646
.019
.403
.033
.001
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.007
.051
.749
.44
.581
.237
.015
.031
.016
.16
.024
.048
.087
.002
--
.204
.003
.01
.003
.016
.27
.036
.007
.012
.104
.062
.14
.381
.093
.094
.035
.004
.004
.001
.001
.024
.117
.017
.083
.0
.004
.033
.097
.186
.017
.036
.035
.442
.238
--
.211
--
--
.249
.265
.286
.37
.402
.011
.033
.003
.005
.0
--
.0
.011
.646
.932
.323
.034
.006
.087
.2
.029
.122
.168
.168
.167
.468
.204
.001
.001
--
--
.0
.066
.007
.017
.005
--
.013
.013
.06
--
--
.03
.001
.0
.029
.023
.019
.004
.012
.004
.023
.005
.004
.0
--
.001
.005
.0
.0
.0
.984
.884
.029
.001
.004
.004
.001
.0
.003
.0
.007
.013
.111
.003
--
--
--
--
.001
.001
.001
--
.535
.0
.046
.037
--
--
--
.258
.118
.022
.274
.456
.004
.001
.017
.0
.001
.004
.007
.0
.005
.23
.146
1.0
.0
.037
.008
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
Col18a1
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--
--
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--
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--
--
--
--
C
A
G
A
G
G
3
T
A
C
G
C
C
T
C
G
G
G
7
A
C
C
C
C
T
T
A
G
C
T
G
C
A
C
A
C
G
G
A
G
T
C
C
C
A
T
A
A
T
G
G
A
C
T
G
G
A
G
A
C
G
C
C
A
G
C
G
A
T
T
T
C
C
C
G
G
C
T
G
C
G
G
A
2
G
T
T
C
T
C
T
T
C
A
A
3
T
2
G
G
C
T
A
G
A
C
T
3
T
C
C
C
C
T
A
T
G
A
G
T
G
T
2
A
G
G
G
C
C
C
A
T
C
A
T
G
G
2
4
G
2
C
G
C
C
T
T
G
T
G
T
A
G
T
G
3
3
A
G
C
G
C
C
T
T
A
C
G
G
A
A
C
C
A
C
G
C
T
T
C
2
T
12
2
C
C
2
C
4
10
G
C
6
C
G
C
G
A
G
2
G
C
G
G
G
4
2
A
T
T
2
A
T
A
A
C
3
T
G
C
C
T
6
T
T
C
2
T
T
G
G
G
G
A
A
C
6
6
A
A
G
T
C
A
T
T
A
A
G
A
C
G
C
C
G
T
3
G
G
G
C
T
A
G
T
T
A
G
T
G
A
A
G
G
T
T
A
2
C
C
G
T
T
C
T
C
2
A
2
2
2
2
G
C
4
2
C
A
A
G
C
C
C
T
A
14
T
G
T
T
G
T
A
C
C
G
T
2
C
C
G
A
C
T
C
C
A
C
C
A
G
C
T
T
C
A
G
G
A
G
T
C
T
G
C
G
C
T
C
A
C
T
T
G
A
C
G
C
C
5
A
G
G
A
G
G
A
G
T
A
2
C
A
C
G
  14,388,753
  14,390,897
  14,392,704
  14,393,792
  14,393,793
  14,393,796
  14,393,800
  14,393,815
  14,393,817
  14,393,819
  14,393,821
  14,393,841
  14,393,844
  14,393,847
  14,393,859
  14,393,863
  14,393,866
  14,393,869
  14,394,027
  14,394,134
  14,394,136
  14,394,140
  14,394,143
  14,394,252
  14,394,273
  14,394,349
  14,394,537
  14,394,557
  14,394,560
  14,394,614
  14,394,648
  14,394,702
  14,394,748
  14,394,775
  14,394,831
  14,394,832
  14,394,839
  14,394,841
  14,394,849
  14,395,512
  14,395,636
  14,395,712
  14,395,720
  14,396,202
  14,396,203
  14,396,215
  14,396,349
  14,396,724
  14,396,877
  14,396,921
  14,397,299
  14,397,364
  14,397,621
  14,397,783
  14,397,880
  14,397,881
  14,397,925
  14,397,936
  14,398,020
  14,398,080
  14,398,470
  14,398,474
  14,399,179
  14,399,185
  14,399,228
  14,399,849
  14,399,859
  14,399,874
  14,399,904
  14,399,909
  14,400,008
  14,400,009
  14,400,082
  14,400,092
  14,400,434
  14,400,500
  14,400,527
  14,400,660
  14,400,734
  14,400,828
  14,400,845
  14,400,862
  14,400,966
  14,401,107
  14,401,186
  14,401,432
  14,401,503
  14,401,726
  14,401,904
  14,402,632
  14,402,686
  14,402,689
  14,402,705
  14,408,236
  14,408,238
  14,408,242
  14,408,533
  14,411,251
  14,411,585
  14,413,352
  14,413,486
  14,413,580
  14,413,622
  14,413,784
  14,413,970
  14,414,030
  14,414,316
  14,414,393
  14,414,395
  14,414,543
  14,414,701
  14,414,760
  14,414,770
  14,414,827
  14,414,852
  14,414,969
  14,415,004
  14,415,128
  14,415,225
  14,415,261
  14,415,264
  14,415,296
  14,415,302
  14,415,573
  14,415,668
  14,416,110
  14,416,175
  14,416,326
  14,416,455
  14,416,826
  14,417,071
  14,417,128
  14,417,182
  14,417,283
  14,417,613
  14,417,688
  14,417,709
  14,419,169
  14,419,606
  14,419,717
  14,420,323
  14,420,324
  14,420,999
  14,421,039
  14,421,130
  14,421,164
  14,421,197
  14,433,022
  14,433,260
  14,433,524
  14,433,668
  14,433,751
  14,434,329
  14,434,330
  14,434,575
  14,435,202
  14,435,226
  14,435,647
  14,435,819
  14,435,859
  14,436,091
  14,436,093
  14,436,873
  14,437,046
  14,437,057
  14,437,479
  14,437,516
  14,437,899
  14,438,291
  14,438,961
  14,439,240
  14,439,405
  14,439,520
  14,439,982
  14,440,314
  14,440,323
  14,440,389
  14,440,533
  14,440,545
  14,440,743
  14,440,755
  14,440,756
  14,440,774
  14,440,880
  14,440,882
  14,440,886
  14,440,899
  14,440,914
  14,440,933
  14,440,941
  14,440,954
  14,440,988
  14,441,219
  14,441,319
  14,441,394
  14,441,471
  14,441,992
  14,442,321
  14,442,682
  14,442,741
  14,442,890
  14,443,073
  14,443,106
  14,443,299
  14,443,340
  14,443,525
  14,443,530
  14,443,598
  14,443,870
  14,443,871
  14,443,872
  14,443,879
  14,444,029
  14,444,053
  14,444,129
  14,444,188
  14,444,472
  14,444,670
  14,444,918
  14,444,952
  14,444,984
  14,445,313
  14,445,352
  14,445,525
  14,445,953
  14,446,054
  14,446,205
  14,446,319
  14,447,143
  14,447,268
  14,447,446
  14,447,613
  14,447,653
  14,447,788
  14,447,974
  14,448,067
  14,448,504
  14,448,543
  14,448,576
  14,448,787
  14,448,908
  14,449,138
  14,449,152
  14,450,002
  14,450,375
  14,450,420
  14,450,652
  14,451,122
  14,451,441
  14,451,499
  14,451,526
  14,452,452
  14,452,560
  14,452,704
  14,453,433
  14,453,486
  14,453,551
  14,454,129
  14,454,130
  14,454,916
  14,456,903
  14,457,091
  14,457,518
  14,457,627
  14,457,876
  14,458,843
  14,458,854
  14,458,856
  14,458,879
  14,458,883
  14,459,287
  14,459,952
  14,460,407
  14,461,149
  14,461,424
  14,462,328
  14,463,108
  14,463,368
  14,463,594
  14,463,622
  14,463,685
  14,464,034
  14,464,065
  14,464,078
  14,464,126
  14,464,471
  14,464,489
  14,464,511
  14,464,517
  14,464,519
  14,464,801
  14,464,834
  14,464,935
  14,464,945
  14,465,045
  14,465,046
  14,465,057
  14,465,244
  14,465,462
  14,465,602
  14,466,906
  14,468,999
  14,471,874
  14,471,947
  14,472,444
  14,472,641
  14,472,930
  14,473,316
  14,474,574
  14,474,581
  14,474,716
  14,474,812
  14,475,063
  14,475,281
  14,475,526
  14,475,632
  14,475,650
  14,475,729
  14,475,730
  14,475,879
  14,476,083
  14,476,433
  14,476,655
  14,476,814
  14,476,820
  14,477,239
  14,477,669
  14,477,699
  14,477,784
  14,477,823
  14,477,938
  14,477,986
  14,478,071
  14,478,236
  14,478,521
  14,479,411
  14,479,551
  14,479,676
  14,479,905
  14,480,270
  14,480,353
  14,480,436
  14,480,946
  14,481,026
  14,481,360
  14,482,307
  14,482,330
  14,483,624
  14,483,921
  14,484,003
  14,486,701
  14,486,713
  14,487,092
  14,487,104
  14,487,108
  14,487,604
  14,487,764
  14,488,013
  14,488,043
  14,488,170
  14,488,234
  14,488,305
  14,488,965
  14,488,995
  14,489,144
  14,489,328
  14,489,589
  14,489,807
  14,489,912
  14,490,670
  14,490,730
  14,493,298
  14,494,001
  14,494,494
  14,494,775
6
G
A
T
T
4
-
A
T
2
T
G
G
A
T
T
A
C
-
5
5
C/T
C/G
9
T/C
G
C
A
G
A
C
G
C
T
G
T
A
A
G
A
G
T
T
T
G
C
T
G
C
A
C
7
A
C
3
3
2
A
G
T
A
T
T
G
A
A
A
G
C
14
A
A
T
T
C
C
T
C
C
G
T
T
T
-
A
C
C
2
C
C/T
T/G
T/C
C/G
4
-
3/-
C
2/-
A
A
G
C
G
A
2
T
C
3/-
T/-
-
4
T
A
C
2
A
A
T
A
C
2
C
-
G
T
2
T
T
T
T
G
C
A
G
C
A
A
-
-
C
2/-
C/-
6
T
T
T/-
2
A
G
A
C
T
-
-
-
-
-
C
A
T
G/C
C/T
G
C
G
2
T
A
C
G
3
G
A
G
T
T
T
G
C
-
-
-
-
2/-
C/G
C/G
-
C/5
4/-
10/-
G/C
5
-
T
A
T
A
G
3
-
A
T
-
A
A
-
-
T
T/C
T/C
2/-
A/T
3
C
G
2
-
-
A
A
A
10
-
C
7
A
-
C
C
8
A
T
C
G
G
T
6/-
6/-
G
G
A
C
2
G
C
C
G
G
T
G
T
A
T
T
A
A
3/-
A
A
2
T
T/A
G
A
C
T/7
A/G
3/A
T/C
G/C
-
C
T
A
G
C
G
2/-
T
T
A
C
2
-
-
3
2/-
G
2/-
2/-
-
-
G/3
C/3
-
-
7
G
C
2
G
3/T
T
A
G
-
5
A
2
C
A
C
G
G
T
C
C
2/-
C/-
G
2
C
T
A
G
T
G
T
T
T
A
T
G
C
-
G
A
A
2
A
C
C/-
C
T
T
T
T
C
T
C
T
C
3
-
-
T
A
T
-
-
-
A
A
G
A
A
G
A
C
G
-
T
G
T
A