Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 42,158 (bp)   Positions: 157
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
LE/Stm (Illumina) (KNAW) 
.0
.022
.0
.002
.0
.006
.053
.097
.07
.0
.0
.0
.001
.531
.0
.023
.001
.171
.168
.0
.003
.633
.002
.003
.003
.001
.0
.009
.025
.322
.054
.001
.002
.124
.01
.001
.001
.015
.028
.01
--
--
--
.022
.025
.009
.008
.078
.001
.003
.003
.012
.228
.251
.084
.021
.008
.013
.001
.007
.069
.0
.0
.008
.002
.007
.017
.005
.106
.001
.006
.001
.052
.28
.001
.0
.0
.001
.015
.019
.087
.114
.004
.0
.0
.001
.003
.0
.011
.088
.0
.0
.002
.012
.034
.007
.0
.001
.268
.022
--
.003
.001
.001
.015
.005
.933
.938
.229
.701
.001
.998
.514
.0
.007
.319
.467
.497
.002
.011
.003
.094
.012
.013
.118
.023
.019
.001
.001
.0
.0
.0
.011
.0
.0
.001
.012
.132
.086
.074
.116
.021
.003
.002
.019
.151
.152
.29
.435
.063
.052
.051
--
.002
.0
.055
1.0
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
Clic6
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
A
C
10
G
A
T
C
2
C
T
A
A
C
T
2
G
A
G
G
C
G
A
8
A
A
T
C
A
C
T
G
A
C
G
A
C
G
T
C
T
A
C
C
A
G
C
T
C
C
T
G
C
T
A
T
G
T
T
G
T
A
T
T
T
T
A
T
A
C
A
19
T
C
C
T
C
T
C
T
C
T
A
C
T
A
A
T
T
C
10
G
A
T
6
C
A
C
C
T
A
G
A
A
A
A
T
12
10
C
C
G
T
A
A
G
C
A
A
C
G
T
2
A
C
C
2
A
G
C
C
C
T
C
C
A
A
T
G
G
G
T
G
G
8
G
A
T
A
C
C
T
C
4
T
A
T
T
  36,260,145
  36,261,192
  36,261,642
  36,261,777
  36,261,967
  36,262,064
  36,262,148
  36,262,195
  36,262,197
  36,262,561
  36,262,776
  36,262,972
  36,262,988
  36,263,183
  36,263,393
  36,263,573
  36,263,975
  36,264,466
  36,264,467
  36,265,557
  36,266,003
  36,266,387
  36,266,559
  36,266,577
  36,266,601
  36,266,718
  36,267,042
  36,267,083
  36,267,093
  36,267,353
  36,267,408
  36,267,833
  36,268,449
  36,268,527
  36,268,588
  36,268,681
  36,268,682
  36,268,757
  36,268,856
  36,268,862
  36,269,110
  36,269,141
  36,269,154
  36,269,461
  36,269,539
  36,269,857
  36,269,905
  36,269,985
  36,270,193
  36,270,195
  36,270,799
  36,270,856
  36,271,113
  36,271,139
  36,271,348
  36,271,549
  36,271,633
  36,271,655
  36,271,919
  36,272,174
  36,272,771
  36,273,184
  36,274,296
  36,274,348
  36,274,415
  36,274,765
  36,275,226
  36,275,619
  36,275,739
  36,275,764
  36,275,808
  36,276,275
  36,276,291
  36,276,358
  36,276,780
  36,276,799
  36,276,858
  36,276,950
  36,277,104
  36,277,226
  36,277,337
  36,277,396
  36,277,901
  36,277,919
  36,278,102
  36,278,477
  36,278,618
  36,278,678
  36,279,634
  36,280,674
  36,280,784
  36,281,117
  36,281,786
  36,283,128
  36,283,675
  36,283,858
  36,286,052
  36,286,279
  36,286,628
  36,287,672
  36,288,861
  36,290,477
  36,290,483
  36,290,485
  36,290,777
  36,290,983
  36,291,028
  36,291,030
  36,292,339
  36,293,208
  36,293,443
  36,294,133
  36,294,250
  36,294,381
  36,294,408
  36,294,546
  36,294,552
  36,294,554
  36,294,653
  36,294,788
  36,294,881
  36,294,910
  36,295,669
  36,295,826
  36,296,085
  36,296,449
  36,296,450
  36,296,591
  36,296,607
  36,296,623
  36,296,703
  36,296,706
  36,296,721
  36,296,727
  36,296,735
  36,296,740
  36,296,748
  36,296,766
  36,296,768
  36,296,770
  36,296,777
  36,296,781
  36,296,794
  36,296,842
  36,296,868
  36,298,283
  36,299,024
  36,299,081
  36,299,659
  36,299,677
  36,299,888
  36,299,945
  36,300,188
  36,300,541
  36,300,567
  36,301,547
  36,301,949
G
G
10/-
2
G
C
T
-
4
C
C
T
T
C
-
A
G
4
A
G
T
3
-
2
-
C
G
T
T
C
A
G
T
A
G
A
C
C
G
A
C
T
T
2
15
T
7
T
T
C
A
G
C
C
A
A
-
C
C
C
G
C
C
C
-
G
A
G
T
G
-
A
T
T
C
T
C
T
G
5
C
C
-
A
G
G
C
C
7
10/-
A
C
C
-
T
G
T
G
C
G
A
G
G
G
3
3
12/-
-
A
T
A
C
G
C
2
2
C
C
T
A
A
-
T
T
T
2/-
-
T
T
T
2
C
G
-
2
2
2
2
2
2
2
2
2
-
A
G
A
A/5
T
T
C
T
-
3/TC
G
C
C