Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 56,166 (bp)   Positions: 92
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SBN/Ygl (MCW) 
.059
.0
.0
.012
.009
.972
.002
.006
.002
.03
.086
.017
.112
.066
.018
.001
.001
.011
.561
.009
.0
.01
.001
.003
--
--
--
--
--
--
--
--
.099
.424
.049
.041
.856
--
--
--
.061
--
--
.013
.276
.003
.0
.001
--
--
--
--
.034
.016
.001
--
.001
.017
.023
.004
.007
.0
.0
.003
.023
.116
.993
.112
.154
--
.126
.163
--
--
--
--
--
--
.017
.0
.002
.016
.001
--
--
--
--
.156
.144
.557
.548
.018
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Clic4
Clic4
Clic4
Clic4
Clic4
Clic4
Clic4
Clic4
Clic4
Clic4
C
T
T
G
A
C
G
C
G
G
T
C
C
A
A
G
G
T
A
6
G
T
G
G
T
T
2
C
4
C
T
2
C
G
A
G
A
A
T
C
G
A
C
A
C
14
A
T
C
2
C
G
A
C
C
A
T
A
C
A
T
C
C
A
T
T
A
T
T
T
G
T
C
G
A
A
A
C
2
G
T
C
T
A
G
C
2
2
T
3
4
G
  157,338,871
  157,338,967
  157,339,090
  157,339,211
  157,339,217
  157,339,532
  157,339,609
  157,339,614
  157,340,780
  157,341,634
  157,341,698
  157,343,201
  157,343,236
  157,343,251
  157,343,379
  157,343,411
  157,343,451
  157,343,461
  157,343,486
  157,343,976
  157,346,864
  157,348,741
  157,349,262
  157,349,590
  157,350,853
  157,350,921
  157,351,342
  157,351,373
  157,351,394
  157,351,413
  157,351,414
  157,351,441
  157,351,818
  157,351,852
  157,352,464
  157,352,930
  157,353,165
  157,353,258
  157,353,269
  157,353,310
  157,353,358
  157,354,056
  157,354,060
  157,354,074
  157,354,852
  157,355,155
  157,356,283
  157,356,847
  157,357,620
  157,357,692
  157,358,463
  157,358,464
  157,359,335
  157,359,338
  157,359,343
  157,360,532
  157,361,161
  157,361,248
  157,361,267
  157,361,453
  157,364,094
  157,364,354
  157,364,366
  157,364,372
  157,364,612
  157,365,386
  157,365,671
  157,366,145
  157,366,278
  157,366,759
  157,366,954
  157,367,078
  157,367,670
  157,367,768
  157,367,788
  157,367,790
  157,367,794
  157,367,796
  157,367,848
  157,367,982
  157,367,990
  157,368,336
  157,368,409
  157,378,943
  157,380,511
  157,385,149
  157,385,155
  157,385,904
  157,385,923
  157,388,810
  157,388,813
  157,393,733
T
C
C
T
G
T
A
A
C
A
C
T
T
A/C
G
-
A
G
-
-
A
G
T
5
C
-
-
C/G
4/-
4/--
T/4
-
A
-
G
6
-
G
T/G
3
A
G
C/2
2
17
-
G
C
T
2/-
C/5
5
-
-
-
3
C
C
T
A/G
A
C/3
C/A
A/C
G
16
G
C
C
C
A
C
5
5
C
C
C
A
-
C
-
G
C
A/G
G/-
T
-
2/-
T/2
3/-
4/-
-