Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly RGSC_v3.4
   

Chromosome Start Position Stop Position
Region Size: 624,365 (bp)   Positions: 214
Conservation 
Genes ( + ) 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SS/JrHsdMcwi (MCW) 
.086
.014
.02
.742
--
--
--
.003
.001
.07
.026
.958
--
--
--
--
--
--
--
--
--
.084
--
.069
.0
.018
.002
.063
--
.003
.182
--
.025
.002
.01
.003
.005
.01
.011
.001
.002
.001
.002
.001
.02
.0
.003
.017
.001
.0
.001
.0
.0
.084
.582
.585
.813
.831
.079
.098
.081
.028
.143
.001
.001
.01
--
--
--
--
--
.055
.079
.004
.022
.015
.059
.005
.004
.102
.049
.002
.078
.002
.001
.084
.012
.559
.425
.205
--
.002
.006
.001
.003
--
--
--
--
--
--
--
--
--
--
--
.867
--
--
--
--
--
--
--
.003
.001
.098
.0
.0
.005
.025
.033
.069
.008
.113
.742
.001
.001
.344
--
.09
.027
--
--
--
--
--
--
--
--
--
.036
.009
.035
.309
.0
.02
.019
.008
.001
.029
.981
.996
.984
.9
.002
--
.508
.101
.006
.005
.0
.004
--
.013
.007
--
--
.108
.014
.012
--
.006
.019
.005
--
--
.254
.671
.049
.046
.002
.016
.02
.009
--
.003
.049
.032
.086
--
.553
--
--
--
--
--
--
--
.005
.004
.418
.001
.968
.012
.091
.735
.757
.685
--
.001
.004
.062
--
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
Cdh13
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
T
G
A
A
G
A
T
C
C
2
2
A
C
8
A
A
3
3
A
A
T
2
T
C
3
2
2
T
G
T
2
6
C
T
A
T
C
T
A
C
T
C
T
G
C
T
C
G
T
T
C
A
G
G
G
G
C
G
C
T
T
G
T
A
G
T
G
G
G
G
G
C
C
C
C
T
5
C
C
A
C
C
G
C
G
C
4
2
G
A
G
C
A
C
C
T
T
C
C
2
12
T
T
G
4
T
2
C
C
A
4
2
G
C
T
T
T
4
2
T
2
4
C
C
G
A
2
T
A
G
G
4
T
A
G
G
T
T
C
C
C
G
G
T
A
T
C
C
T
T
C
T
C
C
C
G
A
G
T
G
2
2
A
T
A
2
T
C
C
T
T
G
C
C
2
C
C
T
4
7
5
A
3
T
2
A
T
G
G
A
G
C
3
A
4
C
A
A
A
G
A
4
G
T
G
2
4
2
A
4
6
T
4
C
  61,648,746
  61,671,110
  61,671,113
  61,671,351
  61,673,062
  61,673,316
  61,677,616
  61,688,929
  61,688,932
  61,701,862
  61,716,905
  61,719,649
  61,721,956
  61,753,772
  61,753,774
  61,753,779
  61,753,839
  61,753,866
  61,753,909
  61,753,936
  61,754,367
  61,758,021
  61,772,132
  61,783,403
  61,802,493
  61,806,863
  61,812,414
  61,818,007
  61,844,734
  61,844,784
  61,856,894
  61,862,114
  61,865,222
  61,865,227
  61,865,237
  61,865,240
  61,865,243
  61,865,247
  61,865,261
  61,865,266
  61,865,268
  61,865,284
  61,865,287
  61,865,289
  61,865,305
  61,865,314
  61,865,319
  61,865,377
  61,865,426
  61,865,431
  61,865,435
  61,865,440
  61,865,444
  61,865,456
  61,865,466
  61,865,467
  61,865,527
  61,865,531
  61,865,560
  61,865,585
  61,865,607
  61,865,727
  61,898,004
  61,906,228
  61,923,286
  61,927,861
  61,930,193
  61,930,201
  61,930,209
  61,930,213
  61,930,221
  61,933,584
  61,942,205
  61,958,970
  61,960,163
  61,960,164
  61,960,200
  61,960,213
  61,960,220
  61,960,568
  61,960,574
  61,960,588
  61,960,630
  61,960,648
  61,960,660
  61,963,433
  61,977,867
  61,983,490
  61,983,509
  61,987,170
  61,998,860
  62,008,871
  62,008,874
  62,016,775
  62,016,779
  62,016,869
  62,016,900
  62,016,913
  62,017,045
  62,017,138
  62,017,476
  62,017,511
  62,017,523
  62,017,529
  62,017,548
  62,017,733
  62,021,518
  62,025,331
  62,025,356
  62,026,901
  62,028,275
  62,028,277
  62,029,776
  62,029,780
  62,032,667
  62,042,025
  62,055,140
  62,057,252
  62,057,254
  62,057,408
  62,065,067
  62,065,068
  62,065,073
  62,070,249
  62,074,812
  62,091,527
  62,094,104
  62,096,017
  62,099,574
  62,102,099
  62,114,661
  62,114,672
  62,124,227
  62,124,248
  62,124,292
  62,124,296
  62,124,300
  62,124,316
  62,145,672
  62,145,720
  62,145,722
  62,154,927
  62,160,377
  62,170,026
  62,178,448
  62,192,265
  62,192,544
  62,192,550
  62,192,582
  62,192,649
  62,197,665
  62,207,048
  62,207,058
  62,207,075
  62,207,092
  62,220,865
  62,233,460
  62,240,235
  62,240,821
  62,353,806
  62,353,807
  62,356,503
  62,373,273
  62,374,364
  62,382,476
  62,382,477
  62,405,573
  62,405,585
  62,415,034
  62,420,970
  62,420,971
  62,442,219
  62,455,028
  62,455,042
  62,455,050
  62,455,055
  62,455,059
  62,458,442
  62,466,761
  62,471,945
  62,471,946
  62,471,986
  62,471,988
  62,473,265
  62,482,206
  62,543,400
  62,547,278
  62,560,903
  62,560,905
  62,564,821
  62,575,999
  62,582,191
  62,585,499
  62,585,512
  62,585,523
  62,587,172
  62,614,024
  62,614,042
  62,614,062
  62,614,164
  62,614,166
  62,638,060
  62,660,658
  62,667,945
  62,675,636
  62,676,301
  62,680,138
  62,680,140
  62,681,248
  62,681,978
  62,706,156
  62,714,840
  62,715,183
  62,715,473
T/-
G/C
A/C
A/-
2
-
T/C
-/CT
-
-
2/-
A/-
C/2
-
-
-
3/-
3/-
T
-
T/C
2/-
-
C/T
3/-
2/-
-
T/2
G/-
T/A
2/-
6/-
A
C
G
G
T
G
T
G
A
2
T/-
A
G
G
T
-
G
G
T
C
C
C
T
T
A
T
A
-
A
C
-
2
G/-
G
G/-
G/-
G/-
G/-
G/2
2
2
2
C/3
T/3
5/-
2
2
-
2
A
2
2
-
C/2
4/-
-
T
A/-
2
2
-
C/G
C/G
TG/TA
T/2
C/G
C/A
2/-
-
T/C
T/C
G/3
4/-
3/3
-
T
T
A/-
4/-
2/-
G/C
C/G
2
A
T/5
4/-
2/-
-
2/-
4/-
C/2
C/2
A
A/-
-
C
A/-
7
3
-
3
-
G/T
G/A
T/A
T/A
-
-
-
17
3
5
A/-
T/A
-
-
2
C
-
T/C
C/G
C/G
C/G
-
-
2
2
G/3
2/-
2/-
A/-
G
A/3
2/-
T/C
C/T
-
2
4
A
C/T
C/2
2/-
C/-
C/2
T/-
-
-
-
C
-
4
2/-
-
T/C
2
2
A/-
G/C
-
3/-
A/C
4/-
2
T
T/G
T
C
C
-
2
3
G/A
2/-
4/-
2/-
A/G
4/-
6/-
A
4/-
C/T