Variant Visualizer
Strain data for RGSC Genome Assembly 5.0 is now available. Update the pull down menu below to browse available strains.
Step 1: Select strains to compare
 
ACI/Eur (ICL)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
ACI/Eur (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v1.3-14
ACI/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
BBDP/Rhw (ICL)
 
Sequenced By: University of Oxford (Dr. Dominique Gauguier)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Grant Information: Wellcome Trust Senior Fellowship (057733) and Wellcome Trust Core Award Grant (075491/Z/04)
BN-Lx (ICL)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform: SOLID
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information: MC-A654-5QB00
BN-Lx (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
BN/NHsdMcwi (ICL)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
BN/NHsdMcwi (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
BN/SsN (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
Buf/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
COP/Crl (MCW & UW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v2.3-5
Breeder: Charles River Laboratories
Grant Information: NIH (CA77876)
F344/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
F344/NCrl (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Charles River Laboratories
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
FHH/EurMcwi (ICL)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
FHH/EurMcwi (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v1.3-14
FHH/EurMcwi (MDC)
 
Sequenced By: Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: Illumina/Solexa, Genome Analyzer II
Secondary Analysis: CASAVA Software v1.7
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
FHL/EurMcwi (ICL)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
FHL/EurMcwi (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v1.3-14
GH/OmrMcwi (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v2.3-5
GK/Ox (ICL)
 
Sequenced By: University of Oxford (Dr. Dominique Gauguier)
Platform: Illumina GAII
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: University of Oxford
Grant Information: Wellcome Trust Senior Fellowship (057733) and Wellcome Trust Core Award Grant (075491/Z/04)
LE/Stm (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Dr. Tadao Serikawa, Kyoto Japan.
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
LE/Stm (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: Dr. Tadao Serikawa, Kyoto Japan.
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
LEW/Crl (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Charles River Laboratories
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
LEW/NCrl (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Dr. Bina Joe, University of Toledo
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
LH/MavRrrc (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Dr. Anne Kwitek, University of Iowa, RRRC and Dr. Jean Sassard
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
LL/MavRrrc (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Dr. Anne Kwitek, University of Iowa, RRRC and Dr. Jean Sassard
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
LN/MavRrrc (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Dr. Anne Kwitek, University of Iowa, RRRC and Dr. Jean Sassard
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
M520/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
MHS/Gib (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Prof. Giuseppe Bianchi, University Vita Salute San Raffaele
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
MNS/Gib (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Prof. Giuseppe Bianchi, University Vita Salute San Raffaele
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
MR/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
SBH/Ygl (ICL)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
SBN/Ygl (ICL)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
SHR/NHsd (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Harlan Laboratories
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002), Euratrans (HEALTH-F4-2010-241504) and NIH/NHLBI HL094446 and Robert M. Hearin Foundation
SHR/OlaIpcv (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
University of British Columbia (Dr. Steven Jones)
Platform: Illumina Hiseq 2000 and GAII
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information: LSHG-CT-2005-019015, HEALTH-F4-2010-241504
SHR/Olalpcv (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Prof. Timothy Aitman)
Platform: Illumina
Secondary Analysis: GATK
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
SHRSP/Gcrc (ICL)
 
Sequenced By: Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: Illumina Hiseq 2000 and GAII
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: University of Glasgow, Prof. Anna Dominiczak
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
SHRSP/Gcrc (MDC)
 
Sequenced By: Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: Illumina/Solexa, Genome Analyzer II
Secondary Analysis: CASAVA Software v1.7
Breeder: University of Glasgow, Prof. Anna Dominiczak
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
SR/Jr (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
SR/JrHsd (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v1.3-14
Breeder: Harlan Laboratories
SS/Jr (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002), Euratrans (HEALTH-F4-2010-241504) and NIH/NHLBI HL094446 and Robert M. Hearin Foundation
SS/JrHsdMcwi (ICL)
 
Sequenced By: Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) and Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina Hiseq 2000 and GAII
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
SS/JrHsdMcwi (MCW)
 
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.5.9-r16 and GATK v1.3-14
Grant Information: R01 HL089930
SS/JrHsdMcwi (MDC)
 
Sequenced By: Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: Illumina/Solexa, Genome Analyzer II
Secondary Analysis: CASAVA Software v1.7
Breeder: Medical College of Wisconsin
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
WAG/Rij (ICL)
 
Sequenced By: University of Oxford (Dr. Dominique Gauguier)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Grant Information: Wellcome Trust Senior Fellowship (057733) and Wellcome Trust Core Award Grant (075491/Z/04)
WKY/Gcrc (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: University of Glasgow, Prof. Anna Dominiczak
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
WKY/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)
WKY/NCrl (ICL)
 
Sequenced By: Imperial College London (Prof. Timothy Aitman)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Charles River Laboratories
Grant Information: MRC core funding, BHF Center of Research Excellence (RE/08/002) and Euratrans (HEALTH-F4-2010-241504)
WKY/NHsd (ICL)
 
Sequenced By: University of Oxford (Dr. Dominique Gauguier)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder: Harlan Laboratories
Grant Information: Wellcome Trust Senior Fellowship (057733) and Wellcome Trust Core Award Grant (075491/Z/04)
WN/N (KNAW)
 
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLID
Secondary Analysis: SAP42 (Developed at RNAAS)
Breeder: National Institutes of Health
Grant Information: EURATRANS (HEALTH-F4-2010-241504)