Tmem174 (transmembrane protein 174) - Rat Genome Database

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Gene: Tmem174 (transmembrane protein 174) Rattus norvegicus
Analyze
Symbol: Tmem174
Name: transmembrane protein 174
RGD ID: 1561129
Description: Predicted to be involved in phosphate ion homeostasis. Located in apical plasma membrane. Orthologous to human TMEM174 (transmembrane protein 174); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC499516; similar to hypothetical protein MGC13034
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,695,051 - 31,738,819 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,726,283 - 31,760,975 (-)EnsemblGRCr8
mRatBN7.2229,992,070 - 29,993,601 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,992,073 - 29,993,601 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx237,049,225 - 37,050,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,143,597 - 35,145,128 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,960,465 - 29,961,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,748,706 - 28,750,237 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,748,707 - 28,750,237 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,846,783 - 47,848,314 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4229,257,827 - 29,259,358 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera226,027,993 - 26,029,524 (-)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Targeted Disruption of a Proximal Tubule-Specific TMEM174 Gene in Mice Causes Hyperphosphatemia and Vascular Calcification. Miyazaki-Anzai S, etal., J Am Soc Nephrol. 2022 Aug;33(8):1477-1486. doi: 10.1681/ASN.2021121578. Epub 2022 Apr 22.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Tmem174
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,695,051 - 31,738,819 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,726,283 - 31,760,975 (-)EnsemblGRCr8
mRatBN7.2229,992,070 - 29,993,601 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,992,073 - 29,993,601 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx237,049,225 - 37,050,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,143,597 - 35,145,128 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,960,465 - 29,961,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,748,706 - 28,750,237 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,748,707 - 28,750,237 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,846,783 - 47,848,314 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4229,257,827 - 29,259,358 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera226,027,993 - 26,029,524 (-)NCBICelera
Cytogenetic Map2q12NCBI
TMEM174
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38573,173,193 - 73,175,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl573,173,193 - 73,175,143 (+)Ensemblhg38GRCh38
GRCh37572,469,020 - 72,470,970 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,499,830 - 72,506,295 (+)NCBIBuild 36Build 36hg18NCBI36
Celera568,364,379 - 68,366,326 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef567,674,745 - 67,676,692 (+)NCBIHuRef
CHM1_1571,901,724 - 71,903,671 (+)NCBICHM1_1
T2T-CHM13v2.0573,654,534 - 73,656,484 (+)NCBIT2T-CHM13v2.0
Tmem174
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,771,486 - 98,773,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,771,486 - 98,773,918 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381398,634,978 - 98,637,410 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,634,978 - 98,637,410 (-)Ensemblmm10GRCm38
MGSCv371399,404,933 - 99,407,365 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361399,735,143 - 99,737,490 (-)NCBIMGSCv36mm8
Celera13107,700,981 - 107,703,413 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.11NCBI
Tmem174
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542527,402,129 - 27,404,414 (-)Ensembl
ChiLan1.0NW_00495542527,402,376 - 27,404,414 (-)NCBIChiLan1.0ChiLan1.0
TMEM174
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,140,063 - 42,143,046 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1540,293,697 - 40,296,316 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,138,978 - 42,140,805 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1542,738,383 - 42,739,894 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl542,738,383 - 42,739,992 (-)EnsemblpanPan2panpan1.1
TMEM174
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,066,058 - 56,068,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,065,645 - 56,067,161 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha253,039,810 - 53,042,055 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,587,724 - 56,589,969 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,588,069 - 56,588,874 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,648,651 - 53,650,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,416,762 - 54,419,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,308,051 - 55,310,296 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem174
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213187,495,199 - 187,496,988 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365493,362,807 - 3,363,774 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365493,362,825 - 3,363,774 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM174
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,336,049 - 82,337,155 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1282,335,831 - 82,337,658 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2284,044,238 - 84,046,167 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM174
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,515,691 - 67,517,487 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl467,515,947 - 67,519,015 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604916,283,506 - 16,285,432 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem174
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249052,223,093 - 2,225,855 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249052,223,128 - 2,246,818 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem174
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13197,968,351 - 197,969,262 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem174
514 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:97
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000020879
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 8 14 28 54 52 35 17 35 175 42 17 81 48 17

Sequence


Ensembl Acc Id: ENSRNOT00000020879   ⟹   ENSRNOP00000020879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,726,283 - 31,760,975 (-)Ensembl
mRatBN7.2 Ensembl229,992,073 - 29,993,601 (-)Ensembl
Rnor_6.0 Ensembl228,748,707 - 28,750,237 (-)Ensembl
RefSeq Acc Id: NM_001024298   ⟹   NP_001019469
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,726,280 - 31,727,811 (-)NCBI
mRatBN7.2229,992,070 - 29,993,601 (-)NCBI
Rnor_6.0228,748,706 - 28,750,237 (-)NCBI
Rnor_5.0247,846,783 - 47,848,314 (-)NCBI
RGSC_v3.4229,257,827 - 29,259,358 (-)RGD
Celera226,027,993 - 26,029,524 (-)RGD
Sequence:
RefSeq Acc Id: XM_063282344   ⟹   XP_063138414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,695,051 - 31,738,819 (-)NCBI
RefSeq Acc Id: XM_063282345   ⟹   XP_063138415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,695,051 - 31,738,819 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001019469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138414 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138415 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79357 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020879.3
GenBank Protein Q68FU0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019469   ⟸   NM_001024298
- UniProtKB: Q68FU0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020879   ⟸   ENSRNOT00000020879
RefSeq Acc Id: XP_063138415   ⟸   XM_063282345
- Peptide Label: isoform X2
- UniProtKB: Q68FU0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063138414   ⟸   XM_063282344
- Peptide Label: isoform X1
- UniProtKB: A6I546 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FU0-F1-model_v2 AlphaFold Q68FU0 1-243 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691091
Promoter ID:EPDNEW_R1616
Type:initiation region
Name:Tmem174_1
Description:transmembrane protein 174
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0228,750,225 - 28,750,285EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561129 AgrOrtholog
BioCyc Gene G2FUF-54718 BioCyc
Ensembl Genes ENSRNOG00000015472 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020879.6 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7108570 IMAGE-MGC_LOAD
InterPro TMEM174 UniProtKB/Swiss-Prot
KEGG Report rno:499516 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94822 IMAGE-MGC_LOAD
NCBI Gene 499516 ENTREZGENE
PANTHER PTHR31020 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN 174 UniProtKB/Swiss-Prot
Pfam TMEM174 UniProtKB/Swiss-Prot
PhenoGen Tmem174 PhenoGen
RatGTEx ENSRNOG00000015472 RatGTEx
UniProt A6I546 ENTREZGENE, UniProtKB/TrEMBL
  Q68FU0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Tmem174  transmembrane protein 174  LOC499516  similar to hypothetical protein MGC13034  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC499516  similar to hypothetical protein MGC13034      Symbol and Name status set to provisional 70820 PROVISIONAL