Conflict Report: Baylor 3.4 chromosome X

The chromosome location of genes was compared between the Baylor 3.4 and Celera genome assemblies. 164 genes were assigned to different chromosomes in the two assemblies. 111 of these fell into 6 groups based on sequential location of 5 or more genes. Two regions on Baylor 3.4 chromosome X were mapped to Celera chromosomes 1 and 3. Four genes did not fall into either of these regions. For additional conflict information see conflict reports for regions on chromosomes 1, 7, 17, and 19. A single gene conflict report is also available.

RGD

BAYLOR 3.4

CELERA

RGD ID

GENE SYMBOL

ACC ID

CHR

START

END

STRAND

ACC ID

CHR

START

END

STRAND

ChrX:127307832-128782153

1566282

RGD1566282_predicted

XM_236533

X

127307832

127367166

+

XM_001054034

3

44628527

44687820

-

1560247

Cldn2_predicted

XM_236535

X

127538843

127548190

+

XM_001054180

3

44458315

44467662

-

1559905

Morc4_predicted

XM_236536

X

127559354

127607796

-

XM_001053814

3

44398574

44447151

+

XR_005857

X

127670789

127672231

-

XR_007316

3

44334211

44335653

+

1564353

RGD1564353_predicted

XM_217225

X

127752321

127812949

-

XM_001053696

3

44204166

44259294

+

1566312

MGC114520

NM_001024890

X

127813183

127866223

+

NM_001024890

3

44153229

44203932

-

61955

Prps1

NM_017243

X

128249845

128271890

+

NM_017243

3

43777613

43799657

-

621654

Tsc22d3

NM_031345

X

128336407

128340026

-

NM_031345

3

43710348

43713972

+

XR_005882

X

128440756

128441293

+

XR_007292

3

43613371

43613908

-

1565674

Mid2_predicted

XM_343825

X

128496180

128595523

+

XM_001053301

3

43484698

43586952

-

1565570

Vsig1

NM_001037784

X

128750375

128782153

+

NM_001037784

3

43302083

43334282

-

ChrX:154748299-160683658

XR_006663

X

154748299

154749430

-

XR_007407

1

134136740

134137871

+

2623

Fmr1

NM_052804

X

154756030

154793781

+

NM_052804

1

134092389

134130140

-

1564059

Fmr1nb_predicted

XM_215239

X

154833443

154856108

+

XM_001055042

1

134039224

134062009

-

1564599

RGD1564599_predicted

XM_215240

X

155107285

155107958

+

XM_001054979

1

133951998

133952671

+

1565592

Aff2_predicted

XM_219832

X

155462364

155971236

+

XM_001054673

1

132969464

133469839

-

1562747

RGD1562747_predicted

XM_214774

X

156620139

156623654

-

XM_001054261

1

132341855

132345370

-

1560491

Ids

XM_579042

X

156640129

156661030

+

XM_001054447

1

132376251

132380356

+

1563037

RGD1563037_predicted

XM_219837

X

156926467

156951201

+

XM_001053713

1

132108405

132133135

-

68320

Gabre

NM_023091

X

158335157

158353614

+

NM_023091

1

131038888

131056052

-

2648

Gabra3

NM_017069

X

158405508

158633509

-

NM_017069

1

131236779

131471226

-

XR_006746

X

158659856

158661281

-

XR_007288

1

131496626

131498051

-

1566078

RGD1566078_predicted

XM_343837

X

158765198

158765828

-

XM_001053559

1

131589349

131589979

-

68331

Gabrq

NM_031733

X

158843491

158855960

+

NM_031733

1

131660366

131672835

+

1562030

RGD1562030_predicted

XM_219729

X

158874828

158876824

+

XM_001053679

1

131691675

131693670

+

620247

Cetn2

XM_215222

X

158917610

158923209

-

XM_001053739

1

131733778

131739309

-

1359337

Nsdhl

NM_001009399

X

158923024

158954913

+

NM_001009399

1

131739124

131770245

+

1565857

RGD1565857_predicted

XM_219735

X

159030853

159032432

-

XM_001053900

1

131845519

131847098

-

1563752

Pnma3_predicted

XM_219736

X

159058220

159059649

+

XM_001054018

1

131870973

131872402

+

1565442

RGD1565442_predicted

XM_219738

X

159068517

159086030

-

XM_001054068

1

131880643

131898156

-

1566014

RGD1566014_predicted

XM_577058

X

159089207

159090953

+

XM_001053469

1

131899600

131901346

+

XR_006790

X

159191062

159191962

-

XR_007655

1

136869412

136870267

+

1564630

Zfp275_predicted

XM_219713

X

159237894

159254927

+

XM_001059933

1

136815214

136832031

-

1559982

RGD1559982_predicted

XM_219714

X

159284297

159286579

-

XM_001058237

1

136783671

136785929

+

XR_006802

X

159307919

159317591

-

XR_007641

1

136752465

136762485

+

1562245

Trex2_predicted

XM_219746

X

159334471

159336082

-

XM_001058052

1

136736127

136737738

+

1562991

RGD1562991_predicted

XM_215225

X

159337590

159356684

-

XM_001059802

1

136715523

136734617

+

2207

Bgn

NM_017087

X

159380556

159393408

+

NM_017087

1

136680177

136692375

-

621304

Atp2b3

XM_343839

X

159400429

159470682

+

XM_001057885

1

136605172

136673058

-

1565183

RGD1565183_predicted

XM_212890

X

159509052

159509581

+

XM_001057767

1

136566275

136566804

-

1565535

Dusp9

NM_001037973

X

159538011

159541936

+

NM_001037973

1

136533932

136537857

-

69249

Pnck

NM_017275

X

159555524

159559424

-

NM_017275

1

136516496

136520396

+

619711

Slc6a8

NM_017348

X

159571196

159580092

+

NM_017348

1

136495565

136504461

-

1302944

Bcap31

NM_001004224

X

159583682

159614142

-

NM_001004224

1

136461515

136491975

+

1562128

Abcd1_predicted

XM_343840

X

159614402

159636219

+

XM_001059399

1

136439439

136461255

-

1560615

Plxnb3_predicted

XM_343841

X

159681645

159694782

+

XM_001057493

1

136380862

136393999

-

727856

Srpk3

NM_184045

X

159696739

159701301

+

NM_184045

1

136374343

136378905

-

2863

Idh3g

NM_031551

X

159701344

159710253

-

NM_031551

1

136365514

136374300

+

62034

Ssr4

NM_017199

X

159710429

159714301

+

NM_017199

1

136361466

136365338

-

1561214

Pdzd4_predicted

XM_219716

X

159716488

159746837

-

XM_001057431

1

136329560

136359279

+

619777

L1cam

NM_017345

X

159784791

159801552

-

XM_001053015

1

136279867

136293056

+

2186

Avpr2

NM_019136

X

159821859

159823487

+

NM_019136

1

136256505

136258134

-

628901

Arhgap4

NM_144740

X

159824135

159839007

-

NM_144740

1

136240985

136255857

+

1565315

Ard1_predicted

XM_343842

X

159843947

159849143

-

XM_001057202

1

136230964

136236045

+

621688

Renbp

NM_031095

X

159849354

159858287

-

NM_031095

1

136221769

136230702

+

1563804

Hcfc1_predicted

XM_343843

X

159875670

159900535

-

XM_001057067

1

136179592

136204386

+

1563841

Irak1_predicted

XM_343844

X

159959281

159969065

-

XM_001057078

1

136116636

136126420

+

3075

Mecp2

NM_022673

X

159980588

160029650

-

NM_022673

1

136055820

136105113

+

620978

Opn1mw

NM_053548

X

160095741

160115965

+

NM_053548

1

135969801

135990028

-

2645

G6pdx

NM_017006

X

160186450

160192312

+

NM_017006

1

135677014

135696552

+

1562076

RGD1562076_predicted

XM_577060

X

160218054

160226679

+

XM_001054902

1

135721316

135729941

+

1563513

LOC501665

NM_001024368

X

160234830

160238636

+

NM_001024368

1

135738092

135741898

+

1563983

Ubl4a_predicted

XM_215228

X

160239219

160240747

+

XM_001055202

1

135742481

135744009

+

1562476

RGD1562476_predicted

XM_215227

X

160253160

160255164

+

XM_001056585

1

135756422

135758426

+

XM_219723

X

160261780

160277569

-

XM_001055498

1

135765042

135780831

-

1560964

RGD1560964_predicted

XM_215220

X

160291002

160298406

-

XM_001055598

1

135794264

135801772

-

2676

Gdi1

NM_017088

X

160299114

160305776

-

NM_017088

1

135802480

135809142

-

620423

Atp6ap1

NM_031785

X

160306353

160313433

-

NM_031785

1

135809719

135816799

-

NM_001025748

X

160319388

160326973

-

NM_001025748

1

135822754

135830339

-

1359588

Dnase1l1

NM_001014223

X

160327966

160336446

+

NM_001014223

1

135831332

135839812

+

621178

Rpl10

NM_031100

X

160336635

160338841

-

NM_031100

1

135840001

135842207

-

2551

Emd

NM_012948

X

160351227

160354243

-

NM_012948

1

135854576

135857592

-

1560614

Flna_predicted

XM_238167

X

160362386

160385619

+

XM_001056685

1

135865731

135888964

+

735223

Ikbkg

NM_199103

X

160407168

160420189

+

NM_199103

1

135659512

135672875

-

1333290

Olr1768_predicted

NM_001000264

X

160469244

160470182

-

NM_001000264

1

135618700

135619638

+

XR_006869

X

160682174

160683658

+

XR_007478

1

135497774

135499258

+

Single Genes

3322

Phb

XM_001053030

X

36613022

36614779

-

XM_001053031

10

79374762

79386570

+

1359415

MGC105830

NM_001008370

X

73108020

73109851

+

XM_001052971

1

199945208

199953129

-

NM_001039346

X

76627926

76628976

+

NM_001039346

1

236580658

236592001

+

1562947

LOC501617

NM_001024366

X

121648062

121674376

+

XM_001078508

7

113744210

113765866

+

 


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