Putative mis-assemblies in the reference genome identified through computational approaches as described and published in Guryev et al.; Distribution and functional impact of DNA copy number variation in the rat. Nature Genetics 40, 538 - 545 (2008). Hovering over a feature provides additional annotation including the Misassembly ID, Method (Whole Genome Shotgun mapping, Nimblegen RN34 Whole Genome Tiling Array, Affymetrix RaEx Rat Exon Array, Optical_mapping), Type, and Source. Clicking on a feature or selecting the Misassembly ID provides links to the Hubrecht Institute's misassembly pages.
Misassemblies are colored based on type as following: