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Map positions, functions and more
Gene Ontology, Phenotype, Pathway info
Search Strains
Genes, QTL & Strains related to Disease
Data mining, analysis and visualization
Phenotypes & Traits linked to the genome
Phenotype data, Assays, Husbandry and more
Pathway reports and diagrams
Featured RGD Video Tutorials

JBrowse Genome Browser

This video will demonstrate how to use the RGD JBrowse Genome Browser. The JBrowse Genome Browser allows the user to view objects such as genes, variants, QTLs, and so forth in their genomic context. You can view versions for Rat, Human and Mouse.

Molecular Pathway Diagrams

This video will demonstrate how to use the RGD Molecular Pathway Diagrams. You can access the Ontology Report for the pathway, view the description for the pathway with its various interactions and components, and you can click on any of the pathway's interactive features to view more information about that entity.

PhenoGen Informatics Genome/Transcriptome Data and Browser

RGD has been providing links from our gene pages to the PhenoGen Informatics Genome/Transcriptome Data Browser, but there's a good chance you don't know all there is to know about the tool. Want more information about how to use it so you can get the most out of its data and functionality? This informative hands-on workshop video is just the tutorial to help you with that!

Click here to access RGD's Rat Community Videos page.  This page includes all of the tutorial videos that RGD has produced, plus other videos of interest to rat researchers.
 Conference Watch
Keystone Symposia – Epigenetic and Metabolic Regulation of Aging and Aging-Related Diseases, Santa Fe, NM, USA - May 1-5, 2016; Poster Abstract Deadline: March 18, 2016
The Biology of Genomes, Cold Spring Harbor, NY, USA - May 10-14, 2016; Abstract Deadline: February 19, 2016
International Behavioural and Neural Genetics Society (IBANGS) 2016 meeting, Bar Harbor, ME, USA - May 12-16, 2016; Abstract Deadline: February 22, 2016
81st Cold Spring Harbor Laboratory Symposium on Quantitative Biology: Targeting Cancer, Cold Spring Harbor, NY, USA - June 1-5, 2016; Abstract Deadline: March 11, 2016
Curating the Clinical Genome, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK - June 22-24, 2016; Abstract Deadline: May 11, 2016
Intelligent Systems for Molecular Biology (ISMB) 2016, Orlando, FL, USA - July 8-12, 2016; Late Poster Abstract Deadline: May 5, 2016
The Allied Genetics Conference - Mouse Genetics, Orlando, FL, USA - July 13-17, 2016; Abstract Deadline: March 23, 2016
The Allied Genetics Conference – Population, Evolutionary & Quantitative Genetics, Orlando, FL, USA, July 13-17, 2016; Abstract Deadline: March 23, 2016
FASEB Research Conference - Protein Kinase Signaling Network Regulation, Base Village Conference Center, Snomass Village, CO, USA - July 17-22, 2016; Registration Deadline: June 17, 2016
Gordon Research Conference - The Use of Big Data in Health Related Research, The Chinese University of Hong Kong, Hong Kong, China - July 17-22, 2016; Application Deadline: June 19, 2016
7th International Conference on Biomedical Ontology, Oregon State University, Corvallis, OR, USA – August 1-4, 2016; Submission Deadline: April 15, 2016 (paper), May 15, 2016 (poster)
Regulatory & Non-Coding RNAs, Cold Spring Harbor, NY, USA - August 23-27, 2016; Abstract Deadline: June 2, 2016
Genome Informatics, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK - September 19-22, 2016; Abstract Deadline: July 26, 2016
Mechanisms of Aging, Cold Spring Harbor, NY, USA - September 26-30, 2016; Abstract Deadline: July 25, 2016
Biological Data Science, Cold Spring Harbor, NY, USA - October 26-29, 2016; Abstract Deadline: August 12, 2016
AMIA 2016 Annual Symposium, Hilton Chicago, Chicago, IL, USA - November 12-16, 2016; Submission Deadline: March 10, 2016
The 2016 ASCB Annual Meeting, San Francisco, CA, USA - December 3-7, 2016; Talk and Abstract Deadline: August 2, 2016
Keystone Symposia - Omics Strategies to Study the Proteome, Beaver Run Resort, Breckenridge, CO, USA - January 29-February 2, 2017; Abstract Deadline: September 28, 2016
                   
Parkinson Disease
Pathway Suite
RGD publishes the Parkinson disease pathway suite. Click here to explore the details.
Aging and Age-Related
Disease Portal
RGD's announces the release of our tenth disease portal, the Aging and Age-Related Disease Portal. Click here for details.
Parkinson
Disease Pathway
RGD releases the Parkinson disease pathway diagram page. Click here to explore this complex system.
Pathway Diagram
Tutorial Video
RGD's newest tutorial video details what you can see and do on an Interactive Pathway Diagram portal page. Click here to learn more.
Dopamine Signaling
Pathway Diagram
RGD releases a new interactive pathway diagram page for dopamine signaling. Click here to explore the complexity of dopamine systems.
Default Assembly &
Position Display
The Rnor 6.0 assembly is now RGD's default, and the "Position" table on RGD's gene pages has been enhanced with links to multiple genome browsers. Click here to learn more!
Huntington
Disease Pathway
RGD releases the Huntington disease pathway diagram page. Click here to investigate the details of this devastating condition.
MT Chromosome
Now in JBrowse
RGD has added data for the mitochondrial chromosome to our JBrowse genome browsers. Click here to learn more.
 Latest News
    05/02 - RGD publishes an interactive diagram page for the Huntington disease pathway
    04/12 - RGD releases a tutorial video about our Interactive Pathway Diagrams
    04/08 - Rnor6 now RGD's default assembly; position display on report pages enhanced
    04/04 - RGD releases an updated interactive diagram page for the Parkinson disease pathway
    04/01 - RGD announces the release of the Parkinson disease pathway suite
    03/28 - RGD releases an interactive diagram page for the dopamine signaling pathway
    02/08 - RGD publishes two new pathway diagrams: chaperone mediated autophagy and altered mitochondrial autophagy
    12/21 - RGD adds data for the mitochondrial chromosome to JBrowse
    12/15 - RGD announces the release of the Aging and Age-Related Disease Portal
    12/14 - RGD publishes a pathway suite dedicated to mitochondria homeostasis
    11/23 - RGD releases the interactive pathway page for the mitochondrial protein import pathway
    11/20 - RGD releases Cytoscape charts displaying disease and pathway relationships of miRNA target genes
    11/06 - RGD announces the Small Molecule Pathway Database (SMPDB) Annotation Import Pipeline
    10/29 - RGD releases new OLGA-Object List Generator and Analyzer Video Tutorial
    10/28 - RGD members featured in Medical College of Wisconsin promotional video
    10/19 - RGD releases two interactive diagram pages for the mitochondrial autophagy and mitochondria dynamics pathways, two intimately connected networks
    09/28 - RGD publishes an interactive diagram page for the cardiolipin metabolic pathway
    08/31 - RGD releases four interactive diagram pages for doxorubicin drug and related pathways in a pathway suite
    08/26 - Registration is now open for the 2015 Rat Genomics and Models meeting
    08/10 - RGD releases the DNA Damage Response pathway suite
    07/30 - RGD publishes the S-adenosylmethionine Homeostasis Pathway Suite Network
    07/27 - RGD releases a comprehensive update of the insulin responsive facilitative sugar transporter mediated glucose transport pathway
    07/10 - Announcing the Workshop on Genome Resources for the Rat Community
    06/15 - RGD releases an updated pathway suite network for gene expression and regulation
    06/11 - RGD provides new files comparing genes between genome assemblies rn3.4, rn5 and rn6
    06/09 - RGD releases an interactive diagram page for the translation pathway
    05/06 - Paper describing analysis of variation data for 40+ rat strains published in BMC Genomics